Pseudomonas imrae: OQ460_09715
Help
Entry
OQ460_09715 CDS
T11325
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pim Pseudomonas imrae
Pathway
pim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OQ460_09715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pim03019
]
OQ460_09715
03009 Ribosome biogenesis [BR:
pim03009
]
OQ460_09715
Enzymes [BR:
pim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OQ460_09715
Messenger RNA biogenesis [BR:
pim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OQ460_09715
Ribosome biogenesis [BR:
pim03009
]
Prokaryotic type
rRNA helicases
OQ460_09715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
XLY95117
LinkDB
All DBs
Position
1951726..1953399
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAEATHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattcttgcagct
gtcatcgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gctttgcctatcctgcattgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgcgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttactgttgtggccgtttacggcggcgcacctatgggcccgcaactgaaa
gcgatccgtaatggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtgttgtcgaccgtgaaccacctggttctggacgaagccgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccaccgacc
cgtcagaccgtattgttctcggccaccctgccacagtcgatccgtgccattgcagagcgc
catctgcgcgatccgcaacacgtaaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctccgctgtattgagtctgctg
gaagtcgaagacttcgatgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaagggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgctgcccgtggtcttgacgtcccacgtatcacccacgtgttcaacgtt
gacatgccttacgatcctgagtcctacgttcaccgtatcggccgtaccggccgtgcgggc
cgcgaaggtcgtgcactgctgctggtcactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggttgccgaagtccgtctgccggatgcccaggctgttctc
gatgcgcgcatcaaaaagctgaccaacagcctgtcgccgctggtagctgacgctgaagcg
actcatggcgatctgctggatcgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgctgccttgctgcgcaaggccaccaatggtcaggcgctgacgctggcagccatcgag
aaagaacgcccactggtaccgaacaacgctccgcgcggtgatcgtccagagcgttccggc
gaccgtccggaccgtggtgaccgcgagcgtcgtgctccgattccattggccgaaggtcgt
gctcgctgccgtaccgcgctgggcgcgcgtgatggcatcgccgccaagaacctgctgggc
gctatcctcaatgagggtggcctggcacgtgaagcgatcggtcgtatccaggtacgtgac
agcttctccttggtcgagctgccggaagatggcctggaaaaactgctgaccaagctgaag
gacacccgcgttgccggcaaacagctcaagctgcgtcgctatcgcgaagattga
DBGET
integrated database retrieval system
