Pseudomonas imrae: OQ460_18270
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Entry
OQ460_18270 CDS
T11325
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pim Pseudomonas imrae
Brite
KEGG Orthology (KO) [BR:
pim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pim03009
]
OQ460_18270
Enzymes [BR:
pim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OQ460_18270
Ribosome biogenesis [BR:
pim03009
]
Prokaryotic type
rRNA helicases
OQ460_18270
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
XLY92084
LinkDB
All DBs
Position
complement(3859409..3860755)
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AA seq
448 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILH
RLIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVEECVNRQQTM
LFSATTGGSTLRDMVAKILNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKSPTKRKIANR
PKTDNLSLVSKDGMAPLKRRKPETPAAE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagcccacgcctgtgcaagcagcggccatcccgctcgcgctcgaagggcgtgacctg
cgggtgacggctcaaaccgggagcggcaagaccgccgccttcgtcctgccgatccttcat
cgcctgatcggcccggcaaaggtccgtgtcagcatcaagaccctgatcctgctgccaacc
cgtgagctggcacaacagaccctgaaggaagtggagcgtttttcccaattcacctttatc
aaggccggcctgatcactggcggcgaagacttcaaggtccaggctgccatgctgcgcaag
gtgcccgatatcctgatcggcacgccgggccggatgatcgaacaactgaatgccggtaac
ctcgatctcaaggaagtcgaagtactggtgctcgacgaagccgaccgtatgctggacatg
ggctttgccgatgacgtgcagcgcttggtcgaagagtgcgtcaaccgccagcagaccatg
ctgttctctgccaccactggtggttcgaccttgcgcgatatggtcgccaagatcctgaac
aaccctgagcatttgcaggtcaacaacgtcagcgatctgaatgcgaccacccgtcagcag
atcgtcactgccgaccacaatgtgcacaaagagcagatcctcaactggttgctggccaac
gagacctaccagaaggctatcgtcttcaccaatacccgagccatggccgaccgtatctac
ggccgcctggtggcgcaggagtacaaggcatttgtcttgcacggtgagaaagaccagaag
gaccgtaaactggccatcgaccgcctgaaacagggcggtgtcaagattctggtagccacc
gacgtcgccgcccgcggcctcgatgtagatggcctggacatggtgatcaatttcgatatg
cctcgcagcggcgacgaatatgttcaccgcatcgggcgtaccggtcgcgctggcaacgat
ggcctggccatctcgctgatctgccatggcgactggaacctgatgtcgagcatcgagcgc
tacttgaagcagtctttcgagcgccgcaccatcaaggaagtcaaaggtacctacggcggg
ccgaaaaaggtcaaggcgtcgggcaaggccgttggcgtgaagaagaaaaaggtcgacgcc
aagggcgacaagaaaaaaaccggcgccaagtcgccgaccaaacgcaagatcgccaaccga
ccgaagaccgacaacctgtcgctggtcagcaaggacggcatggcgccgctcaagcgtcgc
aagccagaaactccggctgccgagtaa
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