Pseudomonas imrae: OQ460_22130
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Entry
OQ460_22130 CDS
T11325
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pim Pseudomonas imrae
Pathway
pim03030
DNA replication
pim03430
Mismatch repair
pim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OQ460_22130 (holA)
03430 Mismatch repair
OQ460_22130 (holA)
03440 Homologous recombination
OQ460_22130 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pim03032
]
OQ460_22130 (holA)
03400 DNA repair and recombination proteins [BR:
pim03400
]
OQ460_22130 (holA)
Enzymes [BR:
pim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OQ460_22130 (holA)
DNA replication proteins [BR:
pim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OQ460_22130 (holA)
DNA repair and recombination proteins [BR:
pim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OQ460_22130 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
HP_1247_M
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
XLY92805
LinkDB
All DBs
Position
4701157..4702194
Genome browser
AA seq
345 aa
AA seq
DB search
MKLAPAQLAKHLQGGLAPVYIISGDDPLLCQEAADAIRQAARQQGYDERQVFSADASFDW
GTLLQAGASMSLFAQKRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSA
QKTKWGKALVDGPQTQFIQIWPVDGSQLPQWIRQRLSQAGLTASQDAVELIAARVEGNLL
AAAQEIEKLKLMAEGGQITLETVQGAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGE
GVEPPVILWALARELRLLANLSLQYSQGIPLDKAFSLARPPVWDKRKPLMSKALQRHSAQ
RWAQLLLEAQRIDAQIKGQAAGSPWMGLSRLSLLMSGQRLALPAE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaaactagctcccgcccaactcgccaaacacctgcaaggtggcctcgcacccgtctac
attatcagcggtgatgatccgctgttatgtcaggaggccgccgacgccattcgccaggct
gctcgccagcagggctatgatgagcgccaggtgttcagcgccgacgccagcttcgactgg
ggcacactgctgcaagccggcgcgagcatgtcgctgtttgcgcaaaagcgcctgctggaa
ctgcgcctgccttcaggcaagcccggcgacaaaggcgcggcagccttgatggaatactgt
gcacgcccagccgaagacacgctgctgttgatcagcctgcccaagctggatggcagcgcg
cagaaaaccaaatggggcaaggccctggtggacggaccacaaacccagttcatccagatc
tggccggtggatggcagtcaacttccacagtggattcgccagcgcctgtcacaagccggt
cttactgccagccaggatgccgtagagctgatcgcggcccgggtcgaaggcaatttactg
gcagcggcccaggaaatcgaaaagctcaagctgatggccgaaggtgggcagatcacactt
gaaaccgtgcaaggcgccgtggccgacagcgcgcgttttgacgtattcgggctggtggac
gcgatcctcaatggcgaagccgcccacgccttgcgcatgctcgaagggctgcgcggcgaa
ggagtggaaccgccagtgattctctgggccctggcccgggaattgcgtctgctggccaac
ttgtccttgcaatacagccagggcatcccgctggacaaggccttcagcctggcccgaccg
ccggtgtgggacaagcgtaaaccgctgatgagcaaagccctacaacgacactcggcgcaa
cgctgggcgcaattgctgctggaagcccagcgtatcgatgcgcagatcaagggtcaggcg
gcaggatcgccgtggatgggcctcagtcgcttgtcgctgctgatgtccggccaacgcctg
gcactccccgccgaataa
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