Psychromonas ingrahamii: Ping_0008
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Entry
Ping_0008 CDS
T00450
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03420
Nucleotide excision repair
pin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ping_0008
03430 Mismatch repair
Ping_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pin03400
]
Ping_0008
Enzymes [BR:
pin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ping_0008
DNA repair and recombination proteins [BR:
pin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ping_0008
MMR (mismatch excision repair)
Other MMR factors
Ping_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
NIDO
Motif
Other DBs
NCBI-ProteinID:
ABM01883
UniProt:
A1SQW8
LinkDB
All DBs
Position
complement(13204..15375)
Genome browser
AA seq
723 aa
AA seq
DB search
MDVSYLIDDLNDHQRAAVSAPEQNMLVLAGAGSGKTRVLTHRIAWLMQVENIPTYSILAV
TFTNKAAKEMRGRITDICPQQIGGMWIGTFHGTAHRLLRLHYQEANLPEQFQIIDSDDQK
KMVKRIIKSLNLDEKYYPAKELQWYINDKKDEGLRAKHIQVGYSQQEKQRLQVYQAYEEA
CQLAGLVDFAELLLRAHELLLNNPSLLLHYQQRFRHVLVDEFQDTNKLQYAWLNLLTENN
SYLTIVGDDDQSIYGWRGADVENIQRFLREKDNPVTVCLEQNYRSTGHILNASNQLIKNN
SDRLGKELWTSGEDGQPIAIYSAFNDYDETRYVTSQLKLWQNSGKKLAECAILYRSNAQS
RLFEEQLMAQQIPYHIYGGQRFFDRLEIKDSIAYLRLINNHQDDAAFERIINKPKRKIGN
TTLDKIRLCAREQGYTMWQASLFLIEQKQLSAGANISLSGFIELIKRFENETSELPLFQT
VDHVIRHSGLHSMFENEKGEKSRSRIENLQELVSATKSFVIPPEEQEMSEVTAFLAYAAL
ESGDNQADEFDDAVQLMTMHAAKGLEFPQVFMVGVEEGMFPGQQSADDEVRLAEERRLCY
VGMTRAMQKLTLCHAESRRLYGQEKFHSPSRFISELPEQDIEYIRLKTQVRRVQQPTVKQ
PAFTRENQDISGFRIGQQVTHPKFGEGTVIAQEGSGENSRLQVNFMGVGSKWLMTAYARL
ETV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttcctacttaattgatgatttaaatgatcaccagcgtgctgctgtttccgca
cccgagcagaatatgctggttttagccggtgccggtagtggtaaaacacgtgtattaacg
catcgaatcgcatggttgatgcaggtagaaaacattccaacatattctattttggcggtt
acctttaccaataaagccgccaaggagatgcgtggccgtattacggatatttgcccgcaa
cagataggcgggatgtggataggtactttccatggcaccgcccaccgcttattgcgcctg
cattatcaagaagctaatttacctgaacagtttcaaataattgatagcgatgatcaaaaa
aaaatggtcaaacgtattatcaaaagtcttaatttagatgaaaaatattaccctgctaaa
gagttacagtggtatatcaacgataaaaaagatgagggtttacgggcaaaacatattcag
gttggttatagccagcaggaaaaacaacgcctgcaggtttatcaagcctacgaagaggct
tgccaacttgccggattagttgatttcgcagaattattattacgtgcccacgaattgtta
ttaaataacccttctctgttattacattatcagcaacgtttccgccatgtgttggtcgat
gagtttcaggataccaataaacttcaatatgcctggttaaacctgcttaccgagaacaac
agttatttgaccatagtcggagatgatgaccagtcaatttatggttggcggggcgctgac
gttgagaatattcaacgttttttaagggaaaaagataatccggtgacggtctgcttagag
caaaactaccgatcaacgggacatatattaaatgcctctaaccagcttattaaaaataat
agtgacagattaggcaaagagttatggaccagcggtgaagatgggcaacccattgccatt
tacagtgcatttaatgattatgatgaaacacgttatgttacctcgcagttaaaactatgg
caaaatagtggtaaaaagctggctgaatgtgccattttataccgtagcaatgcacaatct
cgtctttttgaagaacagttaatggcacaacagattccctaccatatttatggtggtcag
cgcttctttgatcgtttagagataaaagacagtatcgcctatctgcgcttaatcaataat
catcaagatgatgcggcatttgaacgtattatcaataaacctaaacgtaaaattggtaat
accacacttgataagattcgactttgtgcccgcgagcagggttataccatgtggcaggcg
agtctgtttttaattgagcaaaaacaactgagtgcgggtgcgaatatttcattatccgga
tttattgaattaataaagcgttttgaaaatgaaacctctgagctgcctttgtttcagacg
gttgaccatgtgatccgtcactccggtttgcatagcatgttcgaaaatgaaaaaggtgaa
aaatcacgcagccgtatagaaaatttacaagagctagtttctgcaactaaatcctttgtg
atcccccccgaagagcaggaaatgagcgaggtcacggcctttttagcttatgcagcgctg
gaatcaggtgataaccaggccgatgaatttgatgatgcagtacaactaatgaccatgcat
gcggcaaaaggattagagttcccgcaagtctttatggtgggtgtggaagaaggcatgttt
cccggacagcaatctgccgacgatgaagtgcgcttagccgaagaacgtcgcctttgttat
gttggtatgaccagagcaatgcaaaaactaaccctttgtcatgccgaaagccgccgttta
tacggacaagagaaattccattctccttctcgttttattagcgagctgccagaacaggat
attgaatatattcgtcttaaaacccaggtccgaagagtccagcaacctaccgttaagcag
cccgcatttacccgggaaaatcaggatatttcaggctttaggattggccagcaagtaacc
catcctaagtttggagaaggcactgttattgcgcaggagggcagcggagaaaacagtcgc
ttacaagtgaattttatgggagtaggcagtaaatggttaatgaccgcttacgctcgtctc
gagacagtatag
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