Psychromonas ingrahamii: Ping_0199
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Entry
Ping_0199 CDS
T00450
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ping_0199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pin03019
]
Ping_0199
03400 DNA repair and recombination proteins [BR:
pin03400
]
Ping_0199
Enzymes [BR:
pin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ping_0199
Messenger RNA biogenesis [BR:
pin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ping_0199
DNA repair and recombination proteins [BR:
pin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ping_0199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HEM4
zf-CXXC
NMDAR2_C
Motif
Other DBs
NCBI-ProteinID:
ABM02067
UniProt:
A1SRF2
LinkDB
All DBs
Position
250662..252470
Genome browser
AA seq
602 aa
AA seq
DB search
MTQSSADNAKQILLDVFGYNEFREGQELIINQLCEGRDALVVMPTGGGKSLCFQIPALVK
PGICFVISPLISLMKDQVDALRACGVAAAYLNSSLSYQQQNQVLNDMHSGQLKLVYMAPE
RLLRPDFLSRLDNLPINLFAIDEAHCISQWGHDFRPEYALLGQLKQRFPDIPLVALTATA
DYATQQDILARLQFNDPLIAIHSFDRPNIEYLLIEKYRPLNQLANYLDEHKNESGIIYCT
SRRRTEELAEKLRVKGLSVRCYHAGMMIEERQSVQDLFIKDKVDIVVATVAFGMGIDKPN
VRFVVHYEIPKNIESYYQETGRAGRDGLPAQAMLFYDPADAGRVRSMLEKNTNEQQQRIE
LHKLNTMVAFAEAQTCRRQVLLNYFGEYSHKSCGNCDVCLDPPKSYDATEDAQKILSCVY
RTGQHFGMGYVVEVLKGAQTARVKSLGHDKLSTFAIGKDQPVEYWLSLLRQLIHCGLLMQ
NLTRGSALQLTEAARPVLKAEQPLYLAVPRLKLVKSKDKKRLLSNFSDNNLFAKLRQLRK
KIADRQDLPPYIIFSDVSLSEMSEIMPTTESQFLNISGVGQIKLKKYGAEFLTLIKQYEE
QL
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaatcaagcgccgataacgcgaaacaaatcttactcgatgtctttggctacaat
gagtttcgcgaagggcaagaactgattattaatcagctttgcgaaggtcgcgatgcttta
gtggttatgccaaccgggggagggaaaagtctttgttttcagatcccagcattagtcaaa
ccgggtatctgctttgttatttcacccttgatctctttaatgaaggatcaggttgatgcc
ctgcgagcttgtggagttgccgctgcctatttaaattctagcctctcttatcagcaacaa
aatcaagttcttaatgatatgcacagtgggcagttaaagcttgtttatatggcccccgag
cgtttgctgcgcccggactttctgagccgcttagataatctccctattaatttgtttgcg
attgatgaggcacactgtatttctcaatggggccatgattttcgtcctgaatatgcatta
cttggacaattaaaacagcgctttcctgatattcctctcgttgctctaacggcaacagcc
gactatgcaacacagcaggacattttagcgcgtttgcagtttaatgatccattaattgct
attcatagttttgatcgccctaatattgaatatcttttaattgaaaaatatcgaccgtta
aatcagttggctaattatttagatgagcataaaaatgaaagtggtattatttattgtacc
agtcgccggcgcaccgaagagttagcagaaaaactgcgtgtaaaagggctatcggtgcgt
tgttaccatgcgggaatgatgattgaagaacgccagtcagtgcaggatctatttatcaaa
gataaagttgatattgtggttgctaccgttgccttcggcatgggcattgataaaccaaat
gtacgttttgttgtgcattatgaaatacctaaaaatattgaatcctattatcaggaaaca
ggccgtgccggacgcgacggtttacctgcgcaggcgatgttattttatgatcccgctgac
gccgggcgggtgcgctcaatgcttgagaaaaacaccaatgaacaacagcaacgtattgaa
ttacataaattaaatactatggtggcatttgcggaggcgcagacttgtcggcgtcaggta
ttacttaattactttggggaatatagccataaaagctgtggcaactgtgatgtctgtctg
gatcctccaaaaagttatgatgcgaccgaagatgcacaaaagattctctcttgcgtttat
cgtaccggacaacattttggaatgggttatgtagttgaggtgctaaaaggtgctcaaact
gcacgggttaagagcttagggcatgataagttgtctacttttgcaattggtaaggatcaa
cctgttgagtactggttaagccttttaagacagttgatccattgtggtttgctgatgcaa
aatttaacacgtggttctgcattgcagttaaccgaagctgcaaggcccgttttgaaagcg
gaacaacccctttatctggcagtgccacgtttaaaactggttaaatctaaagataaaaag
cgacttttatcgaatttttcagacaataatttgtttgctaaattacgacaattacgcaaa
aaaattgcagatcgtcaagatttgccgccttatattattttcagtgatgtttcactgtct
gaaatgagcgaaataatgccaaccactgagtctcaatttttgaatatcagtggtgttggc
caaattaaacttaagaaatatggggctgagtttttaaccttaattaaacaatatgaagag
cagttataa
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