Psychromonas ingrahamii: Ping_0310
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Entry
Ping_0310 CDS
T00450
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pin
Psychromonas ingrahamii
Pathway
pin02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Ping_0310 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pin03021
]
Ping_0310 (rpoD)
Transcription machinery [BR:
pin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ping_0310 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ABM02176
UniProt:
A1SRR1
LinkDB
All DBs
Position
complement(409447..411300)
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AA seq
617 aa
AA seq
DB search
MAQTPQSQLKELIIKGKEKGFLTYAEVNDHLPQDIVESEQIEDIIQMIGDMGIRVVETAP
DADDMLIGADDSETPDEDAVEAAAQVLATVESEIGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGIKEVQTAVSEYPATISGLLDNWDSYEAEEMKLTDLISGFVDPNDDMTQAVS
ATHIGSELSKKQLEDEDKADKDDSDEDDEEEGPKGPDPEEAAEKFAELRKLNQVVEDSIT
KNGRAHAETRAAINEQAEFFQQFKLIPKQFDRMVKAIRFAMNAVRVQERLALKICVEQCK
MPKKEFIKLFKGNETNPAWLEVILSNGTDYATRISEFEEDLRRCLRKMLAVEVQSVLTIT
NMKGISRNMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGR
EPQPEELAERMMMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIALPANCAT
SESLKNATNDVLEGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEQLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacacctcaatcacagctcaaagagcttattatcaaaggtaaagaaaaaggg
tttttgacctacgcagaagttaatgaccacctgccgcaagatatcgttgaatctgagcag
attgaagatattattcaaatgatcggtgacatgggtatccgtgtggtagaaacggctccg
gatgctgatgatatgttgatcggtgctgatgatagcgaaactcctgatgaggacgcggta
gaagctgctgctcaggtgttagcaacggttgaatctgagattggtaggacaacggatccg
gtgcgtatgtatatgcgcgaaatggggacggttgaactactaacacgcgaaggcgaaatt
gttatcgctaaacgtatcgaagaaggtatcaaagaggtacaaactgctgtttctgaatat
cctgcaacaatctcaggactattagataactgggacagctacgaagctgaagaaatgaaa
ttaactgatttaatcagtggctttgtggatcccaatgatgacatgacacaggcggtcagc
gctacgcatatcggatctgagttaagtaaaaagcaattagaagatgaagataaagcggat
aaagatgattccgatgaagatgatgaagaagaaggacctaaaggccccgatcctgaagaa
gcggctgaaaaatttgccgaacttcgtaaattaaatcaagttgttgaagattccatcact
aaaaatggccgtgctcatgcagagacacgcgcagccattaatgagcaggcagagtttttc
caacagttcaaattaatccctaaacaatttgaccgtatggtaaaagcaattcgctttgca
atgaacgctgttcgtgtacaggaacgtttagcattaaagatttgtgttgaacaatgtaaa
atgcctaaaaaagagtttattaagctgtttaaaggcaacgaaacaaatcctgcgtggtta
gaagttattctttcaaatggcactgattatgcaacccggatcagtgaatttgaagaagac
ttaagacgctgtttaagaaaaatgttagcagtggaagtacaaagtgtattaaccattacg
aatatgaaaggtatctctcgcaacatgagcattggtgaagccaaagcacgtcgagcaaaa
aaagagatggtagaagcaaacttacgtctggttatctctatcgccaaaaaatatactaac
cgtggcttacagttcctcgatttaattcaggaaggtaatatcggattaatgaaagcggta
gataaatttgaataccgccggggttacaaattttcaacctatgcaacttggtggatccgt
caggctattacccgctcgattgcagatcaggcgcgtactatccgtattccggtacatatg
attgagaccattaataaacttaaccgtgtctctcgccaaatgttacaggaaatgggccgt
gaaccacagccggaagagctggctgaacgtatgatgatgccggaagataaagtccgtaag
gtattaaaaattgcgaaagagccaatctcaatggaaacacctattggtgatgatgaagac
tctcatttaggcgattttattgaagatacaacgattgcgctgccagctaactgtgcgaca
agtgaaagccttaaaaatgcaactaacgatgtattggaaggcttaacagcacgtgaagcg
aaagtattgcgtatgcgttttggtattgacatgaataccgatcatactcttgaagaagtt
gggaagcagtttgatgtgacacgtgagcgtatccgtcaaattgaagcgaaagcattgcgc
aaacttcgtcacccaagccgcagtgaacaactgcgtagtttcctggatgaataa
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