Psychromonas ingrahamii: Ping_0825
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Entry
Ping_0825 CDS
T00450
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ping_0825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pin03019
]
Ping_0825
03016 Transfer RNA biogenesis [BR:
pin03016
]
Ping_0825
Enzymes [BR:
pin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Ping_0825
Messenger RNA biogenesis [BR:
pin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ping_0825
Transfer RNA biogenesis [BR:
pin03016
]
Prokaryotic type
tRNA degradation factors
Ping_0825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
S1_2
KH_SLS1_2
DUF3016
UFL1
Motif
Other DBs
NCBI-ProteinID:
ABM02668
UniProt:
A1ST53
LinkDB
All DBs
Position
1028524..1030620
Genome browser
AA seq
698 aa
AA seq
DB search
MTPIVKSFQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSIN
PEVNPDVVAMIATSAALSISGMPFKGPIGCARVGYKEGEYLLNPTKTELETSDLNLVVSG
TDNAVLMVESEAGILSEDVMLGAVVFGHDQQQIVVESIKEFAAEVARPAWNWAAPARNEA
LDAAIATEAQARFEQAYQISDKGDRYDAIKAITSEVKEKLLASDETLEAKQIGEYLHDLE
KTVVRTRIIKGEPRIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRD
AQIIDSIMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPSLEEF
PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGEEFVVLSDI
LGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITREIMQIALNQAKAARLHILTVMDQAL
PQGRADISQFAPRIHTIKINTDKIRDVIGKGGAVIRSLCEETGTTIEIEDDGTVKIAATS
GEQADDAINRIKALTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQK
VSDHLKEGQEVKVKVLEVDRQGRVRLSIKEAAEKTTAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgactcctattgttaaaagttttcagtatggcgaacatactgtcactctagaaacgggc
gtaatggctcgtcaggcaactgccgctgtaatgtgtagtatggatgatacctgtgtattc
gtttctgttgttggtaaaaatgctgacaaccaagagcgtgatttctttccgctgacggta
aactaccaggaaaaaacctatgctgcgggtaaaatcccaggtggtttcttcaaacgtgaa
ggccgtccaagcgaagacgaaacactgattgcacgccttattgaccgtccagttcgtcct
ctattcccagccggtttcaaaaacgaagtacaagtgattgcaactgttgtctctatcaac
cctgaagttaacccggatgtcgttgcaatgattgcaacatctgcggcgctttctatctcg
ggtatgcctttcaaggggcctatcggttgtgcacgtgttggttataaagaaggtgaatac
ctgcttaacccaaccaaaactgaattagaaacaagtgatcttaaccttgttgtatctggt
acagataacgctgtcttaatggttgaatctgaagccggtattctaagcgaagacgttatg
cttggtgcggttgtatttggtcacgatcagcaacaaattgttgttgaatcaatcaaagag
ttcgctgcagaggttgctcgtccagcatggaactgggctgcccctgcacgtaacgaagca
ttagatgcggctattgcaactgaagcacaagcgcgttttgaacaagcttaccagatcagt
gataaaggcgatcgttacgatgcgattaaagctatcacctctgaagttaaagaaaaatta
ttagcatctgatgaaacattagaagctaagcaaatcggtgaatacttacacgatctagaa
aaaacagtggtacgtacgcgcattattaaaggtgagccgcgtatcgatggtcgcgatcct
gaaagtattcgtgcattagatgtccgtactggcgtgttacctcgtactcacggtagtgca
ttgtttacccgtggtgaaactcaagcattagtgacggcgacccttggtactcagcgtgat
gcgcaaatcattgacagtataatgggtgagaagaaagataacttcttattacattacaac
ttccctccttattgtgtaggcgaaactggctttgttggctctcctaaacgtcgtgagatt
ggccatggccgtcttgctaaacgtggtgttttggctgttatgccttcgcttgaagaattc
ccatacacagtacgtgttgtgtctgaaatcactgaatcaaacggttcatcttcaatggct
tctgtttgtggtgcatcgctagcattaatggatgcgggtgttcctcttaaagcttctgtt
gcgggaatcgcgatgggtcttgtaaaagaaggcgaagagtttgttgtgctttctgatatt
ctaggtgatgaagatcatcttggtgatatggactttaaagttgccggtactaccgaaggt
attactgcactacagatggatatcaaaattgaagggatcacgcgtgaaatcatgcagatt
gctttaaatcaggcaaaagctgcacgtttgcacattttgaccgtaatggaccaagcactt
ccacaaggtcgcgctgatatttctcaattcgctccacgtattcatactatcaaaatcaac
actgataaaatccgtgatgttattggtaaaggcggcgctgttatccgctctctatgtgaa
gaaaccggtactacaattgaaatcgaagatgacggtactgttaaaattgcagcgacctct
ggtgagcaagctgatgacgcaattaaccgtattaaagcactcacagctgaagttgaagtg
ggtactatctacacaggtaaagtggtacgtttagctgatttcggtgcctttgttaatatc
cttcccggtaaagatggtctagtacatatctcgcaaatctgtgaagagcgtgtacagaaa
gtgtctgatcaccttaaagaaggtcaggaagtgaaagttaaagtattagaagttgatcgc
cagggccgtgtgcgcttaagcatcaaagaagctgctgaaaaaacaacagctgaataa
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