Psychromonas ingrahamii: Ping_1082
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Entry
Ping_1082 CDS
T00450
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pin
Psychromonas ingrahamii
Pathway
pin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ping_1082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pin03400
]
Ping_1082
DNA repair and recombination proteins [BR:
pin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ping_1082
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ping_1082
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABM02921
UniProt:
A1STV6
LinkDB
All DBs
Position
1353219..1355231
Genome browser
AA seq
670 aa
AA seq
DB search
MDKRFQLVSQFSPAGDQPQAIEQLINGLKSGLAFQTLLGVTGSGKTFTLANAIAKLNRPT
LILAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSSDSFIEKDAAINAHIE
QMRLSATKALLERKDVVLVASVSAIYGLGDPTAYLQMMLHLTVGEIISSREILQRLVDLQ
YNRNETELSRGTFRVRGEVIDIFPADSEKEALRIELFDDEVEQISVFDPLTGQGIDKLAR
VTVYPKTHYVTPREQILKAVDAIKVELNERKKEFLEQNKLLEEQRISQRTLYDIEMMNEL
GYCSGIENYSRYLSGRSEGQAPPTLFDYLPKDALLIIDESHVTVPQIGAMYKGDRSRKEN
LVNYGFRLPSALDNRPLKFAEFEKIAPQTIYVSATPSDYEINKSQGEIIRQVIRPTGLLD
PVIEVRPVTTQVDDLLSEINIRLPLKERVLVTTLTKRMAEDLTDYLHEHGIKARYLHSDV
NTVERVEIIRDLRLGIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMG
RAARNLNGKAILYAARITGSMQKAIKVTEDRRELQNKFNIENGIIPQGLSKQVNDVMQLG
QKNLKKGNLKQGKVAEYKANYQIHSEQDILKQIALSEKQMFACAKNLEFEKAALFRDEVT
KLHEQLVSIG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggataaacgctttcaacttgtttctcaattctcacctgccggtgaccaaccccaagcc
attgaacaattaattaatggtcttaagtctggtctcgcttttcagacattgctgggtgtg
acgggatcgggtaaaacatttaccttagcgaatgcgattgcaaagcttaaccgtccgacc
ttaattcttgcgcccaataaaacacttgctgcacagttatacggtgaaatgaaagaattt
tttcccaataacgccgtcgaatattttgtttcctattatgattattatcagcctgaagcc
tatgtacccagttcagattcttttatcgaaaaagatgcggctattaacgcgcatattgaa
cagatgcgcctttctgcgaccaaagcgctcttagaacgtaaagatgtcgtcttagtggct
tccgtctcagcaatctatggtttgggtgatccaaccgcttatttgcaaatgatgctgcac
ctcactgtcggggagataatatcaagccgtgagatactgcagcgtttagtcgatttacaa
tataaccgtaatgaaaccgagctaagtcgcggtacctttcgcgtacgtggtgaagtgatt
gatatctttcctgcagattcggaaaaagaagccttacgaattgagttgtttgatgatgag
gtcgagcaaatttcagtgtttgatccgcttaccggccaaggaatagataagcttgcgcgt
gtgaccgtttaccctaagacccattatgttactccgcgagagcaaatccttaaagccgtc
gacgcgattaaagtagagcttaatgagcgtaaaaaagagtttcttgagcagaataaactg
cttgaagagcagcgcatctcgcagcgtactctgtacgatattgagatgatgaatgaactt
gggtattgctctggtatagaaaactactcaaggtacctctcggggcgcagcgagggccaa
gcacctcctactttgtttgattatctgcctaaagatgctttattaattatcgatgaaagc
catgtcaccgtgccgcaaattggtgccatgtataaaggagaccgttctcgtaaagaaaac
ctggttaattatggctttaggttaccttctgccctggacaaccggcccttgaaatttgca
gagtttgaaaaaatagcaccacaaactatttatgtttcagccacccccagcgattatgaa
attaataaatctcaaggtgagatcatacgtcaggttatacgtcctaccggtttactggat
cctgttatagaagttcgcccggtgacaacgcaggttgatgatctgctctcagagattaat
atccgtttacccttaaaagaacgtgtcttagtgacgacgttaaccaagcgaatggcggag
gatttgactgattatttgcacgagcacggtattaaagcccgttatcttcactccgatgtt
aatacggttgaacgtgttgagataatcagagatttacgcttaggtatttttgacgtgtta
attggcattaacttgttacgcgaaggcctggatattccagaagtttctttggtggctatt
ttagatgccgataaagagggctttctgcgatccgaacgttcacttattcaaaccatggga
cgtgccgcccgtaatttaaatggtaaagccattttatatgccgctcgtattacaggctct
atgcaaaaagcgatcaaagtaaccgaagatcggcgtgaattacaaaataaatttaatatt
gaaaatggcattattccgcaaggtttgtcgaaacaagttaacgatgtaatgcagttgggg
caaaaaaaccttaaaaaaggtaatttaaaacagggtaaggttgctgaatataaagcaaat
taccagatacatagcgaacaagatattcttaaacagatagcattatcagaaaaacagatg
tttgcctgtgctaaaaatttagagtttgaaaaagcggctttatttcgagatgaggtgact
aagttacacgagcagttagtaagtataggataa
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