Psychromonas ingrahamii: Ping_2208
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Entry
Ping_2208 CDS
T00450
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ping_2208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pin03019
]
Ping_2208
03009 Ribosome biogenesis [BR:
pin03009
]
Ping_2208
Enzymes [BR:
pin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Ping_2208
Messenger RNA biogenesis [BR:
pin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ping_2208
Ribosome biogenesis [BR:
pin03009
]
Prokaryotic type
rRNA processing factors
Ping_2208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABM03949
UniProt:
A1SWT4
LinkDB
All DBs
Position
2688014..2691211
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLINATQAEELRVALVDGQMLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVEY
GAERHGFLPLKEIARTYFPEGYSFKGRPNIKDVIKEGQEVIIQIEKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSHLKLPNGMGLIVRTAGVGKTPEEL
EWDLNVLVNHWQAIDEAARAQPAPFLIHRESNVIVRSIRDYLRRDIGEIVIDHAKTFELA
KNHIAMVRPDYVSRLKLYQGEVPLFTHYQVESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATRGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPPRHQREVEN
RMRESVRQDRARIQLGRISRFGLMEMSRQRLRPSLGESASRVCPRCHGQGTIRDNESLAL
AILRLIEEEGLKENTVQIQATVPVAVAAYLLNEKRKDVQKIEKRHSCEVYIIPNANLLTP
HFEIKRTRKDGKEDINYDALEKQHTVYVPNVIKDEHNNEADPVLSGFSSPKQKTTEEKTV
KKEIIPEPKTVEAAKPSLFSKIISAISSLFNDSEKQLPVEEKEAPPVAEPVTNNRNNRNN
SRNRNRNQNRAEKSRTTQAPTEAKATPNKESERPKKQETSVQPPANEDAVAVRRKRRNMR
KKVRIQNTRETDSSSVEAPAVNELDNKPAVNTPKVKKPAAPKSKPVKAETADTELAVEGN
TAPTADKIETEEHKAVAIPSRRSRYLRNNAQRNKKNMTPESDQEEYNLPTDQQDPISSRY
PESETVDSEAKFEPVADQAMAEMVSNAEQQASIAPEIETIKNTSTTQESVEQIQKSVNAA
IQEAQQISSAAETAKVIEKAEVKETPNVKETAPVEETAAVKETAAVKETAAVEETAAVKE
TAAVEETAAVEETAAVKETAAVKETAPVKETAPVKETAPVKETAPVKETAPVKETAPVKE
TAAVEETAPVEETASVKETAEVKETELAGATINEKSINKNQGIISNLKKSSASPMTKTVS
GPLDTNANIMIVAATQRLTVTKSGRPAGSRFATSSASSETVKAKL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcgactcaagcagaagaattgcgtgttgcactcgtagat
ggtcagatgttgtatgacctagatattgaaagccctggtcatgaacaaaaaaaagcaaat
atttacaaaggtaaaatcactcgtgtagagcccagcttagaagctgcgtttgtagaatat
ggtgctgaacgacatggtttccttcctctaaaagagattgcccgcacatacttccctgaa
ggttattcttttaaaggacgtccgaatattaaagacgtcataaaagagggtcaggaagtc
attatccaaattgagaaagaagaacgcggtaataaaggtgcggcattaaccacctttatc
agtttagccggtagttacttagtattaatgccaaacaatcctcgtgcaggcggtatttca
cgtcgcatcgaaggcgatgaacgaactgaactcaaagaagcgcttagccaccttaaacta
cccaacggcatgggacttatcgtacgcacagccggggtaggtaaaacgccggaagagttg
gaatgggatttaaatgtattagttaatcattggcaagccattgacgaagctgcccgtgct
caacctgctccttttctaattcatagagaaagcaatgttatcgtacgctctattcgtgat
tatctgcgccgtgatataggtgagattgttattgatcatgcaaaaacctttgaactggct
aaaaatcacatcgcgatggtgcgtcctgactatgttagccgcttaaaattataccagggt
gaagtgccattattcactcattatcaggtagaaagtcaaatagaatcggctttccagcgt
gaagtccgtttaccttccggtggttcaattgttattgatcccactgaggccttaacctct
attgatattaactctgcacgtgctacacgtggtagtgatattgaagaaactgcttttaat
acaaatctggaagcggcagaagagatagcccgacaattacgcctgcgtgacttgggcggt
ttagttgttatcgactttatcgatatgacaccgcctcgccatcagcgtgaagttgaaaac
cgtatgcgtgaatccgttcgtcaggatagagcccgcattcaattaggtcgtatttctcgt
tttggtctgatggaaatgtcccgtcaacgtcttcggccttctcttggtgaatctgcatct
cgtgtctgccctcgctgccatggtcaaggtaccatccgtgataatgaatcgcttgcatta
gctattttacgactaatagaggaggaaggcttaaaagagaatacggtacaaattcaagcg
actgttccggttgccgttgccgcttacttattaaatgaaaaacgtaaagatgtgcaaaaa
atagaaaaacgtcattcttgcgaagtttatatcattcccaatgcgaacctgttaacaccg
cattttgaaattaaacgtacccgtaaagatggcaaagaagatatcaattacgatgccctt
gaaaaacaacatacggtttatgtgcctaatgtcatcaaagatgagcataacaatgaagcc
gatcctgtattgtctggtttttcaagtcctaaacaaaaaaccacagaagaaaaaacagta
aagaaagagataattccggagcctaaaacagtagaagcggcaaaaccttctctcttttca
aaaataatctcggcgatatcttctctattcaatgatagcgaaaaacaactgcctgttgag
gaaaaagaagcaccgcccgttgcagagccagtcactaataaccgcaataaccgcaacaac
agtcgcaatcggaaccgtaatcaaaatcgcgccgagaaaagtcgtactacgcaagcacct
actgaagctaaagcgactcccaacaaagagtctgaacgccctaaaaagcaagaaacgtca
gttcaacctcctgcaaatgaagatgcagttgccgttcgccgtaaacgtagaaatatgcgc
aaaaaagtacgtattcaaaatacgcgtgaaacagactcgtccagtgtagaagcgccagct
gttaatgagctggataataaacccgctgttaatacgcctaaagttaaaaaaccggcagca
ccgaaaagcaaaccggtaaaagcagaaacagctgacacggaactagcggtagagggtaat
acagccccaacagcagataaaattgaaactgaagaacataaagcagttgcaattccaagt
cgtcgttcacgttatctgcgcaataatgcccaacgaaataaaaagaatatgacgcctgaa
agtgatcaggaagaatataacttaccaacagatcagcaagatccgataagtagtcgctac
ccagaatctgaaactgttgatagtgaagctaaatttgagcctgtcgcagatcaagcaatg
gccgaaatggtaagcaatgctgagcagcaagcttctattgcaccagaaattgaaacgatt
aaaaacacatcgactacacaagaatctgttgagcagattcaaaaaagcgttaatgcagca
attcaagaagctcagcaaatttcgtctgcggccgaaactgctaaggttattgaaaaagct
gaagttaaagaaacccctaacgttaaagaaaccgctccggttgaagaaaccgctgcagtt
aaagaaaccgctgcagttaaagaaaccgccgcagttgaagaaaccgccgcagttaaagaa
accgccgcagttgaagaaaccgccgcagttgaagaaaccgccgcagttaaagaaaccgcc
gcagttaaagaaactgctccagttaaagaaactgctccagttaaagaaactgctccagtt
aaagaaactgctccagttaaagaaactgctccagttaaagaaactgctccagttaaagaa
actgctgcagttgaagaaactgctccagttgaagaaactgcttcagttaaagaaactgct
gaagttaaagaaactgagcttgcaggtgccactattaatgaaaaatcaattaataaaaac
caaggaataatcagtaatcttaaaaaatcttcagcatctccaatgactaaaacagtcagt
ggaccacttgatacaaatgctaacataatgattgttgccgcaacacagcgactaacagtc
actaaatcagggcgcccggctggtagccgttttgctaccagtagtgcgagcagtgaaaca
gttaaggcaaaattataa
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