Psychromonas ingrahamii: Ping_2961
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Entry
Ping_2961 CDS
T00450
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03030
DNA replication
pin03430
Mismatch repair
pin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ping_2961
03430 Mismatch repair
Ping_2961
03440 Homologous recombination
Ping_2961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pin03032
]
Ping_2961
03400 DNA repair and recombination proteins [BR:
pin03400
]
Ping_2961
Enzymes [BR:
pin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ping_2961
DNA replication proteins [BR:
pin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ping_2961
DNA repair and recombination proteins [BR:
pin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ping_2961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
ABM04663
UniProt:
A1SYU8
LinkDB
All DBs
Position
complement(3650873..3654394)
Genome browser
AA seq
1173 aa
AA seq
DB search
MSAEQSTSISTKQPKFIHLRVHSDYSMVDGVTKIKPLVAKAAALNMPALAITEQTNFCGL
VKFYGAAHDAGIKPIVGVDFWVKSELLADEQFRITALAMNNAGYKNLTELISKAYLRGHV
GGRAVIDQDWLAEHNQGIILLSGGKDGDLGKVLLKGNHELAVEIIQFYQQYFAQRYYIEL
IRTNRLNEETYLHYALDWAEKYQLPVVATNEVVFADKALYDAHEIRVCINQGYTLGDNRR
PKQYSDEQYLRSQEEMCELFADIPEALKNSVEIAKRCNVTLRLGEYFLPDFPTGDMSITD
YFCDVSRKGLEDRLAILFDKNAPEFADIRAPYDQRLQIELDVINTMGFPGYFLIVMEFIQ
WSKDNKIPVGPGRGSGAGSLVAYALKITDLDPLELELLFERFLNPERVSMPDFDIDFCMD
RRDEVIDHVAELYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDGISKLIPPTPGM
TLSKAFAEEPRLQERYDGSEEVRALIDMCRTLEGTIRNAGKHAGGVVISPTTITDFSPLY
CDELGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIVQWALDMANAHKHARGEETLFIEKI
CLTEPACFELLKRYETTAVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLQSGMVD
NFIERKHGREAVSFPDEKWQHPSLEEILAPTYGIILYQEQVMQIAQVLSGYTLGGADMLR
RAMGKKKPEEMAKQRETFEQGAIDNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWMKTFYPSYFMAAVMSADMDNTEKIVTLVAECQSMGLDLGPPDVNEGLFKFNVDPDL
RIIYGIGAVKGVGEGPVDAIIEARTAGGKFIDLFDFCNRIDLKHCNKRILEKLILAGALD
KLGPHRAALMETLPNALKSALQHKKAESFGQSDLFGVLTTDSEEIADKFSSVDKWPEKQW
LAGEKETLGLYLTGHPINQYETDIRAFHCLKLSDLVANRRGQNSRVAGLILSMRIMVTKA
GKRMGIITLDDKSARMEITVFADLLDQYEDLLVADNVIVLQGQVSEDYFNGGLKMNAREV
MSIEQARERFASKLRLKVNSDNIDADFQRLLKEALVPAKGGLCPVYIEYTNSLAQTELVL
ARQWSITPSDDLLFSLSRLLGPKNVTLHFDHVN
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagagcaaagcacaagtatttcaactaaacagccaaagtttattcacttaaga
gtgcacagtgattattcgatggtcgatggtgtcactaaaattaaacccttggttgctaaa
gcggctgcactgaatatgcctgcattagctatcaccgaacaaactaatttttgcggtttg
gttaagttttacggtgcagcccatgatgccggtatcaagccgattgtgggtgtcgatttt
tgggtgaaaagtgagctgcttgcagatgaacagtttcgtattacggcattagcaatgaat
aatgccggttataaaaatctgaccgaattaatctcgaaagcttatttaaggggccatgtc
ggaggccgtgctgtgatcgatcaggactggttggctgagcataatcagggcattatttta
ctttccggcggtaaagatggcgatcttggcaaagtgttattaaaaggtaatcatgagctt
gcggttgaaattatccagttttatcaacaatattttgcacagcgttattacattgaatta
atacgcaccaatcgccttaatgaagaaacctatctgcattacgccttagactgggctgaa
aaataccagctgcctgttgttgcaaccaatgaagtcgtttttgctgataaagcgctttat
gatgcccatgaaattcgggtttgtattaatcagggttatacattgggtgataatcgccgt
cctaaacaatacagtgatgagcaatacctgcgtagccaggaggagatgtgcgaacttttt
gcagacattcccgaggcgcttaaaaacagtgttgaaattgcgaaacgctgtaatgtgacg
ctgcgcttgggtgaatattttttacctgacttcccaacaggtgatatgtcaataacggac
tatttttgtgacgtttcacgaaaaggtttagaagatcgtttagccattttatttgataaa
aacgcgcctgaatttgccgatattcgtgccccctatgaccagcgtttacaaattgagtta
gacgtgattaataccatggggtttcctggatactttctgatcgtgatggaatttattcag
tggagtaaggataataagatccctgttggacccggacgaggttcaggtgccgggtcatta
gtggcttatgcactgaaaattacggatcttgatccccttgagcttgaattactgttcgaa
cgattcttaaatccggaacgtgtttcgatgcccgattttgatatcgatttctgtatggac
aggcgtgatgaagtaatcgatcacgttgctgaactctacgggcgagacgcagtatcacaa
atcatcacctttggcactatggcgtcaaaagcggtaatacgcgatgttggtcgggtatta
gggcacccctatggttttgttgatggcatttccaagcttattcctccgacaccgggtatg
accttaagcaaagcatttgcagaagagccgcgtttacaggaacgttatgatggcagtgaa
gaggtacgcgcattaattgatatgtgccgcaccttagaggggaccattcgtaatgccggt
aaacatgctggtggtgtggttatttcgccaaccactattacggatttttccccgttatat
tgtgatgagctgggtaataacccggtgacccaatttgataaaaatgatgttgaaaccgca
gggttagtaaaatttgactttctggggttacgtaccctgacgatagtgcaatgggcgctg
gatatggccaatgcccataaacatgcccgtggtgaagagacgctctttattgaaaaaatc
tgtctgaccgaacccgcctgttttgagttattaaaacgttatgaaaccacggcggtattt
cagctagagtcgcgtggcatgaaggatcttatccgccgtctgcagcccgacagttttgag
gacatgatagccttagtggcgctgtttcgtccaggacccttgcaatcgggcatggtcgat
aactttattgaacgtaaacatggccgggaggcggtttctttccccgatgaaaaatggcag
catccatccttggaagagattttagcgcctacctacggcattattctctatcaagaacag
gttatgcagattgcgcaggtgttatcgggttacacacttggcggggcggacatgctgcgc
cgagcaatgggtaagaaaaaacctgaagagatggccaaacagcgtgagacttttgagcag
ggtgcaattgataatgggattgatggcgaactcgctatgaaaatctttgatttagttgaa
aaatttgcgggttatggttttaataaatcgcattctgcggcctacgctctggtgtcatat
caaacactgtggatgaaaaccttttatccttcatactttatggccgctgttatgtcggcg
gatatggataataccgaaaaaattgttactttagtggcagagtgccagagtatgggactc
gatcttggcccaccagacgtaaacgaaggtttattcaagtttaatgtcgatcctgatctg
cgtattatctacggtatcggcgctgttaaaggcgttggggaaggacccgttgatgcgatt
atcgaagcgcggacagcgggcggtaaatttatcgatctgtttgatttttgcaacagaatt
gatcttaaacactgtaataaacgcattttagaaaaacttattttagcgggcgcactcgat
aaactcggtccgcaccgtgccgctttgatggaaacgttgccgaatgccctgaagtctgcg
ctgcagcataaaaaagcggaatcctttgggcaaagtgatctttttggtgttttaaccacg
gacagtgaagaaattgcggataaattttcctcggtagataaatggccggagaaacaatgg
ttagcgggtgaaaaggaaaccctgggtttatatctgacgggccaccccattaatcaatat
gaaacagatatccgtgcttttcattgtctaaaattatctgatctggtggctaaccgccgc
ggtcaaaatagccgtgttgcgggtctgattctaagtatgcgtattatggtgactaaagca
ggtaaacgtatgggcattattaccttagatgataaaagtgcgcgtatggagattaccgtc
tttgccgatttgctggatcagtatgaagatcttttggtcgctgacaatgttattgtcctg
caggggcaagtcagtgaagattattttaacggggggttaaaaatgaacgcccgtgaagtg
atgagtattgagcaggcacgtgagcgttttgcttcaaaactgcgtttaaaagtcaatagc
gataatattgatgctgattttcaacggctgttaaaggaggcactggtccctgccaaaggc
ggattatgtcctgtgtatattgaatatactaattcactggcccaaactgagctggtatta
gcacgacaatggtcgatcaccccgagtgatgatcttttattttcattatccagactgctt
gggcctaaaaatgtgactttgcattttgatcatgttaactag
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