Psychromonas ingrahamii: Ping_3203
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Entry
Ping_3203 CDS
T00450
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ping_3203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pin03019
]
Ping_3203
03009 Ribosome biogenesis [BR:
pin03009
]
Ping_3203
Enzymes [BR:
pin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ping_3203
Messenger RNA biogenesis [BR:
pin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ping_3203
Ribosome biogenesis [BR:
pin03009
]
Prokaryotic type
rRNA helicases
Ping_3203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABM04890
UniProt:
A1SZH5
LinkDB
All DBs
Position
3956884..3958629
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AA seq
581 aa
AA seq
DB search
MSESTNTNQEVTLPNFTELNLPEALTKVVSELGYETPSPIQAQCIPLLLEGKDVLGLAQT
GTGKTAAFALPLLANIDINLNQPQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGG
QSYDIQFKQLKRGPQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVET
IMKEMPDKRQTALFSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWIVRGVNK
LDALTRMLETEEYDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLK
SGGLDILVATDVAARGLDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPR
ERRLLKAIERATRQEITIMDLPSRDEVTKTRIANFQKQLLSVVESEDLTFYRTLFEEIEN
NTDIDHLDLSAALLYLAQKEKPLQPVEEKFVEPRPNTSNPREERGRRDRNDRNDRGRTER
SDRGRPERSEQGGDKPRGRGRPTDVELEVYRIDVGRSHGVQVKNIVGAIANEADINSRFI
GDIKLSDDYSTIELPKGMPAETLKHLENVYVCKRQLNIKKN
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtcaacaaataccaatcaagaagttaccttaccaaattttactgaattaaat
ttacctgaagcactaacaaaagttgtttctgaattaggttatgaaaccccctctccaatt
caagcacaatgtattcctctgttgttagaaggaaaagatgttctaggtcttgcacaaaca
ggaacaggaaaaacggcagcattcgctttacctttactggccaatattgatattaatcta
aaccaaccacaagtattagcccttgcgccaacgcgtgagttagcaattcaggttgcagaa
gcattccaaacctatgcgcgccatttacgcggtttccatgtacttcctatttatggcggt
caaagttacgacatccaattcaagcagttaaaacgtggacctcaagttgttgtcggcaca
cccggtcgtataatggaccacctaaaacgcaaaacactggacttatcaaatattaaaaca
ttaatacttgatgaagctgacgaaatgttacgtatgggtttcattgacgacgttgaaacg
atcatgaaagagatgccggataagcgccaaaccgcacttttttctgcaaccatgccagat
cagattaaacgtattacaaaacgttacatgaacagcccaactgaagttaaaatccaaagt
aaaacatcaactgtggaaaatattgaacagaaatgttggatagtgcgtggcgttaataaa
cttgatgccctaacacgtatgcttgaaactgaagaatatgatggtgtgatcatctttgcc
cgtactaaaacagcaacagttgaattagccgagcgcttagaagcccgcggttaccgaagc
gcagcattaaatggtgatatgaatcagcaggtacgtgaacgtactattgctcgtttgaaa
tcaggcggtttggatattttagtcgcaacagacgttgctgcacgtggtcttgacgtagaa
cgtttaagtttagtggtcaactatgacattccaacggatacagaatcttatgttcaccgt
atcggacgaacaggccgtgcgggtcgtaagggtaaagcaatattattcgcagcaccgcgt
gaacgtcgtttattaaaagcgattgaacgtgcaacccgtcaagaaattactatcatggac
ttacctagccgtgatgaagtaactaaaacgcgcatcgctaattttcaaaaacaactttta
tctgttgttgaaagtgaagatcttactttctaccgtactttattcgaagaaatcgaaaac
aatacggatattgatcatttagatctttctgcggcccttctttatctggcacagaaagaa
aaacctttacagccagttgaagaaaaatttgtcgagccacgcccaaatactagtaatcct
cgcgaggaacgtggacgtcgcgatcgtaatgaccgtaacgaccgtggacgtactgagcgt
agtgaccgtggacgtcctgagcgcagcgaacaaggaggtgataaacctcgtggacgtgga
cgcccaacggatgttgaattagaagtatatcgtatcgatgtaggtcgttcacatggtgtc
caagttaaaaatattgtgggtgccattgctaatgaagctgatatcaatagccgttttatt
ggtgatatcaaactttcagatgattattcaaccattgaattaccaaaaggtatgccggct
gaaacacttaaacatcttgaaaatgtttatgtttgtaaacgtcagttgaatatcaaaaag
aactaa
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