Psychromonas ingrahamii: Ping_3417
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Entry
Ping_3417 CDS
T00450
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ping_3417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pin03019
]
Ping_3417
03016 Transfer RNA biogenesis [BR:
pin03016
]
Ping_3417
Enzymes [BR:
pin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ping_3417
Messenger RNA biogenesis [BR:
pin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ping_3417
Transfer RNA biogenesis [BR:
pin03016
]
Prokaryotic type
tRNA degradation factors
Ping_3417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rota_NS35_C
Motif
Other DBs
NCBI-ProteinID:
ABM05101
UniProt:
A1T036
LinkDB
All DBs
Position
4222506..4225010
Genome browser
AA seq
834 aa
AA seq
DB search
MTQDPFLDREAQTYEHPVPSREFILEYLEKQAKPISRDALFNAFSLSGEEEAEGLRRRLK
AMERDGQLVWCRNATYALPDKLNLIKGKVIGHKDGFGFLKTEEEGADLFLPAHQMRLLFH
GDKVLVQPVKVDSRGRTEARFVRLLEERKEPIVGRYFVEDGIAVVVPDDSRINQDILINQ
DNNLGARHGQIVVVEILQRPKPRLTAKGKITEILGQDMEPGMEVEVALRTHDIPHQWPEG
LDKELENFTETVPEEAIQGRVDLRQLPLVTIDGEDARDFDDAVFCKAEAGGGWRLWVAIA
DVSYYVRPGTILDKEAINRGNSVYFPDQVVPMLPEILSNGLCSLNPQVDRLCMVSEMVIS
KAGLLTDYKFYEAVMNSHARFTYTKVAAILEGDQTLREQYKPLVPHIEELEHLYKAFKRA
RKIRGGMEFETLETRFIFDQNRKIESIEPITRNDAHKIIEECMIQANVASARLIGKAEAA
ALYRVHETPSQEKLVNFRSFLSELGLSLAGGEKPAPRDYAALAEEFAGREDSELLQTMLL
RSMKQAVYQDENLGHFGLALEEYAHFTSPIRRYPDLILHRAIKYLIEHQAKGQLKSKWTN
TGGYHYLHEEMGALGEHCSMTERRADDATRDVGDALKCEYMQDHVGDVMHGTIAAVTNFG
FFVRLTGIQIDGLVHVTSLLSDYYIFDAGKQTLKGERTGRTFRIGDALDVKVLSVNLDDK
KIDFELADQAAAGQRKRAQNTAARENDRPIDKRARSKAAGKGRANDNAKKSDQPVEKEPA
KQEQKANKPKRKRTIKQGEKNTASSKTKKTTATAKKVGRADRRNKIKQANKINS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaccccttcctagatcgcgaagcgcaaacttacgagcatccagtgccaagt
cgtgaatttattttagaatatttagaaaaacaagcaaaacctattagccgtgatgccctg
tttaacgctttttctttaagcggtgaagaggaagccgaggggttgcgtcgtcgtttaaaa
gcgatggaacgtgatgggcaattagtctggtgccgtaatgcgacttatgcactcccggac
aaattgaatctaattaaaggtaaagtgattggccacaaagatggttttggttttttgaaa
actgaagaagaaggtgccgatctttttttacccgcacatcaaatgcgtttactctttcac
ggcgataaagtccttgtccaaccggttaaagttgattcgcgaggtcgcaccgaagcgcgt
tttgtacgtttattagaagaacgtaaagaacctattgtcggccgttattttgtcgaagac
ggcatcgctgtcgtggtgcccgatgattctcgcatcaatcaagatattctcatcaatcaa
gataacaatctcggtgcccgccacggacaaatagtcgtagtggaaattctccagcgtcca
aaacctcgtttgactgcaaaaggtaaaatcactgaaatactgggtcaagatatggaaccc
ggtatggaagttgaggttgcactgcgtactcatgatatcccgcatcaatggcctgaaggt
ttagacaaagaattagaaaactttactgaaactgtgcctgaagaagcgatacaagggcgt
gtagatttacgccaattaccactggtcacaatagatggcgaagatgcgcgcgattttgat
gatgcggttttctgtaaagctgaagccggtggcggctggcgtctgtgggtagctattgca
gacgtaagctattacgttcgacccggtactattttagataaagaagcgattaatcgtggt
aactcggtctatttccccgaccaggttgtgcctatgttgccggaaatattatctaatgga
ttgtgctcgttaaatccgcaggtcgatcgtttatgtatggtcagtgaaatggttatttct
aaagccggactgctcacggattacaaattctatgaagcagtaatgaattctcatgcacgc
tttacttatactaaagtagcggccattttagagggtgatcagacactgcgcgagcagtac
aaacctttagtgcctcatatcgaagagttagagcacctttataaagccttcaagcgcgca
cgcaagattcgaggtggaatggagtttgaaaccttagaaacgcgttttatttttgatcaa
aaccgtaaaatagaatctatcgagccaataacacgtaacgatgcgcataagatcatagaa
gaatgcatgattcaggcaaacgttgcttcggcacgtttaattggcaaggcagaagctgct
gcgttataccgcgttcatgaaactcccagtcaggaaaaattagttaacttccgttcattt
ttgtcagagcttggtttaagccttgccggtggagagaaaccggcaccgcgtgattatgcg
gcattagctgaagaatttgcgggtcgtgaagacagtgagcttttacaaaccatgttatta
cgctcaatgaaacaagctgtctatcaagatgaaaatctcggacactttggcttggcgtta
gaagagtacgctcacttcacctctcctattcgtcgttacccggatctgattttacaccgt
gccattaaatatttaatcgaacatcaggcaaagggtcagttgaaatcaaaatggaccaat
accggcggatatcattatctacatgaagagatgggtgccttaggcgagcattgttcaatg
actgaacgccgcgccgatgatgccactcgtgatgtaggtgacgctttaaaatgtgaatat
atgcaggatcatgttggtgatgtaatgcacggcactattgccgctgtcaccaactttggt
ttctttgtacgcttaacgggtattcaaatcgatggcttggtccatgtgacaagcttactg
tctgattattatatctttgatgcaggcaaacaaacccttaaaggtgagcgtacgggacgt
acctttaggatcggtgatgcattagatgtgaaagtgttgtcagttaatttagatgataaa
aaaatcgattttgaattagcggatcaagcggcagcgggacaacgaaaacgagctcaaaat
acggccgcgcgtgaaaacgatcgcccgatagataaacgggcacggtcaaaagcggcgggc
aaaggtcgcgcaaatgataacgctaaaaaaagcgatcagccggttgaaaaagaacccgct
aagcaagagcaaaaagccaacaagcccaaaagaaaaagaacgataaaacagggcgaaaaa
aacaccgcatcatcaaaaacaaaaaaaaccacggcaacagctaaaaaagtaggtcgtgct
gatcgccgtaataaaataaaacaagcaaacaaaataaatagctaa
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