Psychromonas ingrahamii: Ping_3445
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Entry
Ping_3445 CDS
T00450
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ping_3445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pin03021
]
Ping_3445
03400 DNA repair and recombination proteins [BR:
pin03400
]
Ping_3445
Enzymes [BR:
pin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ping_3445
Transcription machinery [BR:
pin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ping_3445
DNA repair and recombination proteins [BR:
pin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ping_3445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABM05129
UniProt:
A1T064
LinkDB
All DBs
Position
complement(4255946..4260166)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKQQNKTKEFDGIKIGLASPEMVRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFESFVVVEPGMTDLERRQILLEEEYLDMLEQWGDEFEAVM
GAEAIFSLLKQLDLDHEIAEMREELGTTNSETKRKKLTKRLKLVESFHQSSNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFVYGKLEALGLATTIKAAKKLVDREGGEVWDILEGVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RTLMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRSKINSLGEDMWFQSAKEAEKAYRAG
AVGLQAIVKVRMKQVHIADDKSRTETTNIIETTVGRAILSLIMPEGLPFELVDLPMGKKQ
ISTALNACYRLLGIKHTVIFADQLMYTGFEYATLSGASVCIDDMVIPTTKKTLVEAAEAE
VQEIHEQFQAGLVTAGERYNKVIDIWASANEQVAKAMMENLSKDTVVNSKGEEVQQDSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDIAQDLVITEKDCGSEDGLLVTPLIQGGDVVEALRERVL
GRVVAQDIIKPGTKGEVLIARNVLLDEKLCDLIEEASVDQVWVRSVITCQTDFGACAQCY
GRDLARGHMVGQGEAIGVMAAQSIGEPGTQLTMRTFHIGGAASRAASENNIQVKNTGKIK
LHNAKFVINSEQKVVVTSRSTELTIIDKLGRTKENHRLPYGAVLEKQDGAEITSGEIIAN
WDPHTHPIITEVEGTVQFLDFIEGLSITKQADEFTGLSSTVIIDPAQRPNAGKELRPMVK
LVDPQGNDLFIPGTDVAAQYALAANAIVSLEDGAKVRVGDAVARIPQESSKTRDITGGLP
RVADLFEARTPKDAAILAEVSGTLAFGKETKGKRRLVITQANGEAYEEMVPKWRHLNIFE
GEKIEKGEVISDGPESPHDILRLRGISPVANYITNEVQEVYRLQGVKINDKHIEVIVNQM
LRKGTITDNGDSAFLVGEQAEVARVVIENRRLVAEGKAIATFDYQLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKCDQLHGLKENVIVGRLIPAGTGFAHHRARAAAKAAELAPK
VEETIVDTGTAEQNLADLLNAVDFGD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttttaaagcagcaaaataaaaccaaagaatttgatggtatt
aaaattggtttagcatcacctgaaatggtccgctcatggtcatttggtgaagttaaaaaa
ccagaaacaattaactaccgtacctttaaacctgaacgtgaaggtttattctgtgcgcgt
atctttggtccaatcaaagattacgaatgtttatgtggcaagtataaacgcctgaaacat
cgtggtgttatttgtgaaaaatgtggtgttgaggtaactcagtctaaagttcgtcgtgac
cgtatgggccatatcgaattagcatcccctgtcgctcacatttggttccttaaatcatta
ccgtctcgtatcggcttaatgcttgatatgaccctgcgtgatattgaacgtatcctctat
tttgaatctttcgtggtggttgaacccggcatgacagatcttgagcgtcgtcaaattctt
cttgaagaagaatatttagacatgcttgagcagtggggcgatgagtttgaagctgtaatg
ggcgcagaagctatcttctcgctattaaaacagctggatctcgatcatgagattgctgaa
atgcgtgaagagttggggactactaactctgagactaagcgtaaaaaattaactaaacgt
ctgaaactggttgagtctttccaccagtcttcaaacaaacccgagtggatgatcctgact
gtattgccagtgcttccgccggatttacgtccgcttgtgccacttgatggcggtcgtttt
gcgacatcggatctaaatgacttataccgtcgtgttattaaccgtaataaccgtctaaaa
cgcctactagatttagcggcgccagatatcatcgtacgcaacgaaaagcgtatgttacaa
gagtctgtggatgcattattagacaatggtcgtcgtggtcgtgctattacaggttctaac
aagcgtcctctgaaatcacttgctgatatgatcaaaggtaaacagggtcgtttccgtcag
aatctactcggtaagcgtgtagattactccggccgttctgtaattacagtaggaccgaca
ctgcgtttacaccagtgtggtcttcctaagaaaatggcacttgaactgttcaagcccttt
gtttacggaaaactggaagcattaggtcttgcgacgactattaaagcggctaaaaagctt
gttgatcgtgaaggtggtgaagtttgggacattctggaaggcgtgattcgcgaacatcca
gtactgcttaaccgtgcacccacactgcacagattgggtatccaggcatttgaacccgta
ctgattgaaggtaaagcgattcagcttcacccgctggtttgtgcggcatacaacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgttaactattgaagcacagcttgaagct
cgtactctgatgatgtcgaccaataacatcctatcgccagcaaatggtgagccgattatt
gttccttctcaagatgttgtacttggcctttattacatgactcgttctaagataaattca
ttaggcgaagacatgtggttccaaagcgcgaaagaagcagaaaaagcgtatcgtgccggt
gctgttggtttacaagctattgttaaagtacgtatgaaacaagttcatattgctgatgac
aagagccgtacagaaacaactaatattatcgaaacaaccgttggccgtgcgattttatcg
ttaattatgccagaaggtctgccctttgagcttgttgatttacccatgggtaaaaagcaa
atatcgactgcactgaatgcctgttaccgtctattgggtattaagcatacggttattttt
gctgaccaattaatgtataccggttttgaatatgcaaccttgtcaggtgcttcggtatgt
atcgacgatatggttattcctactactaagaaaaccttagttgaagctgctgaagctgaa
gttcaggaaattcacgaacagttccaggcaggtcttgtaactgccggtgagcgctacaac
aaagttatcgatatctgggcaagtgcgaatgagcaggttgccaaagcgatgatggaaaac
ctttctaaagatactgttgttaatagcaaaggtgaagaagttcaacaagattcgtttaac
agcgtttacatgatggccgactcaggtgcacgtggtagtgctgcacagattcgtcagtta
gcgggtatgcgtggtttgatggctaaacccgatggttcaatcatcgaaacgccgatcaca
gcgaacttccgtgaaggtctaaacgtacttcagtactttatctccacgcacggtgcacgt
aaaggtctggccgataccgcacttaaaacagcaaactcgggttatctaacgcgtcgtctt
gttgatatcgcgcaagatctagttatcactgaaaaagattgtggtagtgaagatggtctg
ctagttacaccgcttatccagggtggtgatgttgttgaagcacttcgtgagcgtgtgctt
ggtcgtgttgtggctcaagacatcattaaaccgggaaccaagggcgaagtcctaattgcc
cgtaatgttctgcttgatgaaaaactatgtgaccttatcgaagaagcatctgttgaccaa
gtttgggtacgttcagttatcacttgtcaaacagactttggtgcttgtgcacaatgttac
ggccgtgaccttgctcgtggccatatggtcggtcaaggtgaagcaatcggtgttatggca
gcgcaatcaatcggtgagccaggaacacagcttacaatgcgtaccttccacatcggtggt
gctgcatctcgtgccgcttctgaaaacaatattcaggttaagaatacgggtaaaatcaaa
ctgcataacgctaagtttgtaattaactctgagcagaaagtagttgttacttcccgttca
acagaattaactattattgataaattaggccgtactaaagaaaaccatagactgccttac
ggtgccgttcttgagaaacaagatggtgctgaaatcacctctggtgaaatcatcgctaac
tgggacccgcatacacatccaattattacggaagtggaaggtactgttcagttcttggac
tttatcgaaggtctgagcattactaaacaagctgatgaatttaccggtttatcaagtact
gttattattgatccggcacagcgacctaatgctggtaaagaattgcgtccgatggttaaa
cttgtcgatccacagggtaatgacttgtttattcccgggacagatgttgcggctcaatat
gcacttgctgcaaacgccatcgttagtcttgaagatggtgcaaaagtacgagtgggtgat
gcggttgcacgtattcctcaagaaagctcaaaaacacgtgacatcacgggtggtttacca
cgcgttgccgatctgtttgaagcgcgtacgccaaaagatgcagccattcttgcagaagtt
tctggtacgcttgcatttggtaaagagactaaaggcaaacgccgcttagttattacccag
gcaaacggtgaagcttatgaagaaatggtgcctaaatggcgtcacctgaacatcttcgaa
ggtgagaagattgaaaaaggtgaggttatttctgatggtcctgaatcaccacatgatatt
cttcgtttacgtggtattagcccggttgctaactacatcactaatgaagtacaggaagtt
taccgcttacagggcgtaaaaattaatgataaacacattgaagttatcgttaaccaaatg
ctacgtaaaggtacaattactgataatggtgattctgcattcttagtaggcgaacaggct
gaagttgcacgtgttgtgattgaaaaccgccgcctggtagccgaaggtaaagcaattgct
acttttgattatcaattattaggtatcacgaaagcatctctggcaactgagtcgtttatc
tcagccgcatctttccaagaaacaacacgggttcttacggaagctgctgttgccggcaag
tgtgatcaattacacggcctgaaagagaatgttatcgttggtcgtctgattcctgccggt
actggtttcgctcatcatagagcaagggccgctgcgaaagctgctgaactggcaccaaaa
gttgaagaaacaattgtagatacgggtacagctgaacaaaacttagctgacttgctaaat
gctgttgattttggtgattaa
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