Psychromonas ingrahamii: Ping_3446
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Entry
Ping_3446 CDS
T00450
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pin
Psychromonas ingrahamii
Pathway
pin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ping_3446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pin03021
]
Ping_3446
03400 DNA repair and recombination proteins [BR:
pin03400
]
Ping_3446
Enzymes [BR:
pin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ping_3446
Transcription machinery [BR:
pin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ping_3446
DNA repair and recombination proteins [BR:
pin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ping_3446
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ABM05130
UniProt:
A1T065
LinkDB
All DBs
Position
complement(4260240..4264280)
Genome browser
AA seq
1346 aa
AA seq
DB search
MGYSYTEKKRIRKDFGKRPQVMEKPYLLSIQLDSFKRFIEVDLTGEVGLEAAFNSIFPIA
SYSGTSELQYVSYRLGEPVFDVKECQIRGVTYSASLRVKLRLVIYDRDAPAGTVKDIREQ
EVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIMLRALEYSTQEILAIFYDTTKFDIKDGVISMS
LIADRLRGEMALFDIAANGKIYVEQGKRITARHIKQLEKDNINTLDVPVEYIAEKDLVVA
KDYISKETGEIIVSANDILTLEILAELTQSGITSFDIIYTNELDCGSFISDTLRVDSSSN
RLEALVEIYRMMRPGEPPTKDAAEGLFHNLFFAEERYELSKVGRMKFNRRVGIDGDEGAG
ILSKDDILSVMKTLIAIRNGDGIVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAVRER
LSLGDLDATMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGL
TRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLATFSRTNSYGFLETPYRKVENGK
PTDQVEYLSAIEEGSFVIAQASASIDENGLLDEELIPCRHKGESTFLSPADIDYMDVSPQ
QIISVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERRLAIDSGVTIIA
KRSGVIDYVDASRIVVKVDDNELLPGEAGIDIYNLTKYTRSNQNTCINQKPTCEPGEPIV
RGDVLADGPSTDMGDLALGQNMKIAFMPWNGYNFEDSILISERVSQEDRFTTIHIQEFSC
VARETKLGSEEISADIPNVGEAALSKLDESGIVYVGAEVKPGDILVGKVTPKGETQLTPE
EKLLRAIFGEKASDVKDSSLRVAASTYATVIDVQVFTRDGVEKDKRALEIEEMQLKAAKK
DLTEKFKILENAIYEKALAILVGAGQDEARLLQMPRAQWLEVQIDDETKQSYLDQIITQY
DEVKADYDKEFDIKRRKITQGDDLAPGVQKIVKVYLAVRRRLQPGDKMAGRHGNKGVISN
IVPVEDMPHDEFGVPVDIVLNPLGVPSRMNIGQVLETHLGLAAKGVGEKLERMIKYQRDI
EITKVREFVQKLYSFGDAPCHVDLNDFDDEAVMRLAKNLYKGLPVATPAFDGANEGEIRE
LLRMADLPESGQLQLTDGRTGIQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEP
GMPESFNVLLKEIRSLSINIELDESN
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgggttactcttatactgagaaaaaacgtattcgtaaggattttggtaaacgtccacag
gtgatggaaaaaccatacctgttgtcgattcaactagattcattcaaacgattcattgaa
gtcgatttaactggagaagttggtcttgaggctgcttttaacagcatcttccctatcgcc
agttattccggtacatcagaattgcaatatgtcagctaccgtttaggtgagccggtattt
gatgtgaaagaatgccaaatccgtggagtaacatactctgcttcattgcgcgttaaatta
cgtcttgttatttatgatcgtgatgcaccagccggcacggttaaagatattcgtgaacaa
gaagtatacatgggtgaaatgccactcatgacagaaaatggtacttttgtaatcaatggt
actgagcgtgttatcgtttcgcaattacatcgtagtcctggtgtcttctttgaccacgat
aaaggtaaaacgcatagttctggtaaagtactttataatgcacgcgtaattccataccgc
ggttcttggttagactttgaatttgatcctaaagataacctctttgttcgtattgaccgt
cgtcgtaaactccctgcaactattatgttgcgagcgcttgagtattcgacacaagaaatt
ctggccatattctacgacacaactaaatttgacatcaaagacggtgttatttcaatgtcg
ctaattgctgaccgcttacgtggtgagatggcgttatttgatattgcagcaaacggcaag
atttatgttgagcagggcaagcgtattacagcgcgccatattaaacagcttgaaaaagat
aatatcaatacgcttgacgtgccagttgagtacattgcagagaaagatctggttgttgct
aaagattatatcagcaaagaaaccggtgaaatcattgttagtgccaacgacatattaacg
cttgaaatattagcggaactgactcagtcaggcattacatcctttgatattatttatact
aatgaactggactgcggttcgtttatttccgatacattacgtgttgatagttcaagtaat
cgccttgaagcgttagttgaaatctaccgcatgatgcgtccgggtgagccaccaacaaaa
gacgcagcagaaggtttattccataacctgttttttgctgaagaacgttacgagctttct
aaagttggccgtatgaagttcaaccgtcgtgttggtattgatggtgatgaaggcgctggt
attttatccaaggatgatatattaagtgtgatgaaaacactgattgctatccgtaatggt
gatggcattgtcgatgatatcgaccatcttggtaaccgccgtatccgttgtgttggtgaa
atggctgaaaaccaattccgtgttggtttagtccgtgttgagcgtgccgtaagagaacgt
ctttctctgggcgatcttgatgcgactatgccacaagatttaatcaatgctaaacctatt
tctgctgctgttaaagagttctttggttcatcacaactgtcacagtttatggatcaaaat
aacccgctttcagaagtaacccataaacgtcgtatttcagcattagggcctggtggtcta
acgcgtgaacgtgccggctttgaagtacgtgacgtacatccaacgcattacggtcgtttg
tgtccaatcgaaaccccagagggaccaaacattggtctgattaactctttggcaactttc
tcacgcaccaacagttacggtttcttagaaacaccttaccgtaaagttgaaaatggtaaa
ccaacagatcaagttgaatacctttctgcgattgaagaaggttcattcgtcattgcacag
gcaagcgccagtattgatgaaaatggtttgctggacgaagaattgatcccttgtcgtcat
aaaggtgagtctacctttttgagccctgcggatatcgattatatggacgtatcaccacag
cagattatttctgttgcggcgtcattgattccattcctagagcatgatgatgctaaccgt
gccttaatgggttcgaacatgcaacgtcaagccgttccaacactacgtgcggacaaaccg
cttgtaggaacaggtattgaacgtcgtcttgcaatcgattctggtgtaacaatcatcgct
aaacgtagtggtgttattgattatgtcgatgcatcacgtattgttgttaaagttgatgat
aacgagctccttcctggtgaagcgggtatcgatatttacaatttaactaaatacacccgt
tcaaatcagaatacctgtattaaccaaaaacctacctgtgaacctggcgaacctattgtt
cgtggtgatgtactggccgatggcccgtcaacagatatgggcgaccttgctttaggccaa
aacatgaagattgccttcatgccttggaatggttacaactttgaggattcaatccttatt
tctgagcgtgtttcacaggaagacagattcactacaattcatattcaagagttctcatgt
gttgcacgtgaaactaaattgggtagtgaagaaatttctgccgatatcccgaacgttggc
gaagcggcactaagtaaacttgatgaatcaggtattgtatacgtaggtgctgaagttaaa
cctggcgatatacttgttggtaaagtgacacctaaaggtgaaacacagctaacacctgaa
gaaaaactattacgagctatctttggtgagaaagcatcagacgttaaagacagttcttta
cgcgtggcagcctcaacctacgcaacggttattgacgtacaagtctttactcgagatggt
gttgaaaaagataaacgtgcgcttgaaatagaagaaatgcagcttaaagcggcgaagaaa
gatttaactgaaaagttcaaaatcttagaaaacgcaatttatgaaaaagccttagcgatt
cttgttggtgccggtcaggatgaagcgcgtctgctacagatgcctcgtgcacagtggtta
gaagtgcagattgatgatgaaactaaacagtcttatttagatcaaatcattactcaatat
gatgaagtcaaagctgattacgataaagagtttgatatcaaacgtcgcaaaatcactcaa
ggtgatgatcttgcacctggtgttcagaagattgttaaagtgtatctagctgtccgtcgt
cgcctgcaacctggtgataaaatggcgggtcgtcacggtaacaaaggtgttatttcaaac
atcgtgcccgtagaagatatgccgcatgatgagtttggtgttcctgttgatatcgtactt
aacccgctgggtgtaccgtcacggatgaacatcggtcaggttttggaaactcacttaggt
cttgctgccaaaggtgtgggcgaaaaacttgagcgtatgattaaataccagcgtgacatt
gaaattactaaagtgcgcgaattcgttcagaaactatactctttcggtgatgcgccatgt
catgttgatcttaacgattttgatgatgaagcggtaatgcgtttagctaagaacctgtac
aaagggttacctgttgcaacacctgcatttgatggtgccaacgaaggcgaaatccgtgag
ctgttacgcatggctgatttgcctgaatcaggtcaattacaactgaccgatggccgtacg
ggtattcagtttgaacgtcctgtgaccgttggttatatgtacatgctgaaactgaatcac
ttggttgatgacaagatgcatgcgcgttctactggctcttacagcttagtaacacagcag
ccgcttggtggtaaagcgcagttcggtggacaacgttttggtgagatggaagtatgggca
ttagaagcttatggtgctgcttacactctacaagaaatgctgacggttaaatccgatgat
gttaacggtcgtactaagatgtataaaaacatcgttgacggcgaccatagaatggaaccg
ggcatgcctgaatcattcaacgtattgttgaaagagatccgttcattaagcatcaacatt
gaactagatgaaagtaactaa
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