Pediococcus inopinatus: PI20285_02360
Help
Entry
PI20285_02360 CDS
T05337
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pio
Pediococcus inopinatus
Pathway
pio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI20285_02360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pio03019
]
PI20285_02360
Messenger RNA biogenesis [BR:
pio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PI20285_02360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
Motif
Other DBs
NCBI-ProteinID:
AVK99585
LinkDB
All DBs
Position
477806..479353
Genome browser
AA seq
515 aa
AA seq
DB search
MFVVSIIILLIAVAIGFEIRKIEHQRQLRIAHEQAQQTLEKAEQEGKVAAKKALKLGKVE
TLAYQESIEQEITTDVQDNERKSTWLDQREQVLQEKEDLLNRRFDNFKSKEAGLKTEKQA
VKEIKQQAEELVNKREDTLQDVAEMSKGKAKDYVLDQTSRDLKEEEKRVVRNTETEYQSS
SEKEAKNLIAHSIEHSGIRSHVYSSNRTMDVPNNEALGKIIGNSGQNVRTLEALTGIDIN
IDDQQRLITLNGYDPMRREIAKRAMTQIVQVNRINPDIVEQIVNQTVRTVDELIRGFGEQ
AINELNVKNIHPDLIKFIGRMHFRTSYGQNILDHSIEAANLAGVFAAELGEDVDLAKRAG
LLHDIGKSIDRDVEATHVELGVELATKYHEDPVVINAIASHHGDVEAKYVISDLVAAADA
ISGSRQGARSESAADYLQRISSLEGIANKYPGVQESYAIQAGRELRVIVKPNQTSDKSIE
KLAGNVKDQIEQEVTYPGQVKVTVVRKLQVVEYAG
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttgtgagtattattatccttctgattgctgttgcaattggatttgaaattcgt
aaaattgaacatcaacggcagttaagaattgcccacgaacaagcacaacagacccttgaa
aaagctgaacaagaaggcaaagttgcggccaaaaaagccttgaagttgggcaaagttgag
acattggcttatcaagaatcaattgagcaagaaattacaactgacgtacaagacaacgaa
cgtaaatcaacttggcttgatcaacgagaacaggttttacaagaaaaagaagacttgttg
aatcgtcgttttgataattttaagtctaaagaagctggtttaaaaaccgaaaagcaagcc
gttaaagaaattaaacaacaggcagaagaattagttaacaaacgcgaagacacgctccaa
gatgtggcggagatgagcaaaggtaaggctaaagattatgtcttagatcagacttcccgt
gatttgaaggaagaagaaaagcgcgtcgttcggaacacagaaacggagtatcaaagtagc
agtgagaaggaagctaagaatttaattgcccattctattgagcatagtggcattcgctcc
catgtgtactcatcaaatcggacgatggatgtgccaaataatgaggcactgggtaaaatt
attggtaattcaggccaaaatgtccggactttagaggcattgaccgggattgatattaat
attgacgatcaacaacgtttgataacgttgaatgggtatgatccgatgcgccgcgaaatt
gcaaaacgggcgatgactcagattgttcaagttaatcgaattaatccagatattgtggaa
caaattgtgaaccagactgtcagaacagttgatgaactgatccgcggctttggtgaacag
gcaattaatgaattaaatgttaaaaatatccatccagatttaattaagtttattggcaga
atgcatttccggaccagttatggtcaaaatattttggatcactcgattgaagccgctaat
ttggcgggcgtgtttgctgctgaattgggagaagacgttgatctggccaaacgagcgggc
cttttgcatgatattggaaagtccattgatcgcgatgttgaagccacccatgttgaatta
ggggtggaacttgccactaagtatcatgaagatcccgttgttattaatgcaattgcatcg
caccatggggatgttgaagctaagtatgttatttctgatttggtggctgctgcagatgct
atttctggttctcgtcagggtgcgcgaagtgaatcagcagctgattacttgcaacgaatt
tctagtttagaggggattgccaataaatatcctggcgtccaagaaagctatgcgattcag
gcaggtcgtgaacttcgggtgattgtcaaacctaaccaaacgtcagataaaagtattgaa
aaattggctggcaacgttaaggatcaaatcgagcaagaagtgacctatccgggacaggta
aaggtaactgttgtccgtaaattacaagtagttgagtacgcggggtaa
DBGET
integrated database retrieval system
