Pediococcus inopinatus: PI20285_02510
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Entry
PI20285_02510 CDS
T05337
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pio
Pediococcus inopinatus
Pathway
pio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PI20285_02510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pio03021
]
PI20285_02510
03400 DNA repair and recombination proteins [BR:
pio03400
]
PI20285_02510
Enzymes [BR:
pio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PI20285_02510
Transcription machinery [BR:
pio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PI20285_02510
DNA repair and recombination proteins [BR:
pio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PI20285_02510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AVK99604
LinkDB
All DBs
Position
503451..507092
Genome browser
AA seq
1213 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYEC
ACGKYKRIRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIDAGKTPLEKKQLLTEREYREKLGEYGNTFNAKIGGEAIKELLQ
DVDLEKEAEVLKVELKDASGQKRTRAVRRLDIIEAFIKSGNEPDWMVMDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKMNQMGLPVP
MALELFKPFIMKELVSRGLASNIKNAKRKIDRKDDDVYDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVSGKAMRLHPLVCEAYNADFDGDQMAIHLPLSDEAQAEARLLMLAAHHIL
APANGKPVVTPSQDMVIGNYWLTMERENSNGEGMIFKDLNEIRLAMQNGYVSEHSRIGLQ
VSSMPKKPFTDEQRQQILVTTVGKAIFNDILPGGLIYLNEPTNENLVDGTPDKYFLKAGE
DIKAFIKDQPLIPPFKKGFLSDIIAQVYKQYKVTETSLLLDRMKDLGYDISTKSGLTVGI
ADITDLKEKPEIVNAAHKQVATVTKQFRRGLITDDERYERVVGIWNDAKDAIQQKLMESF
DPQNPIYMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPILSNFREGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLTISSIVDGNEVIESLY
DRILGRYTQKSVYNPETGEKIVGKNVMIDEDIAQKVIDAGVETVTIRSAFTCNTRHGVCE
RCYGRNMSTGDRVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNEDITQGLPRIQEI
VEARNPKGRAEITEVTGTVESVEENPAERTKEITIKGETDTRTYTLPITARMKIAEGDFI
HRGSAMNEGSIDPKEMLKVRDVLSTETYLLGEIQRVYRMQGVEILDKHVEIMVRQMLRKI
RVMDPGDTDVLPGTLLDINDFKDANYKTLIAGGIPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMPDYRKIIPKTVGGKVAEPKSL
SDVEKEMDTETSK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtcaataagtttgaaagcatgcaaattgggctcgcatcacctgacaagatc
agaagttggtcatatggtgaagttaaaaagccagaaacgattaattatcggactttaaag
cctgaaaaagatggcttgttcgatgagcgaattttcggaccaacaaaagattacgaatgt
gcctgtggaaagtacaagcggattcgttataagggaattgtctgtgaccgttgtggtgtt
gaagttactaagtcaaaagttcgtcgtgaacgaatgggccatattgaattagccgctcct
gttacacacatttggtactttaaaggtatcccaagtcgaatgggacttgttttagacatg
agtcctcgggctcttgaagaaattatttactttgcttcatacgtcgtaattgacgccggt
aaaacacctttggaaaagaaacaattattaactgaacgtgaataccgtgaaaagcttggc
gaatatgggaatacatttaatgccaaaattggtggagaagctatcaaagaacttctccaa
gatgttgatcttgaaaaagaagctgaagttttaaaagttgaattaaaagatgcttccggt
caaaaacggacacgtgcagtgcgtcgtttagacattattgaggcctttattaaatctggt
aatgaaccagactggatggtaatggatgccattcccgttattccaccggatttacgacca
atggttcaattagatgggggacgttttgccacatctgatttgaatgatttatatcgtcga
gtaattaaccgtaacaaccgtttgaaacgcttgttagatttaaatgcacctggaattatc
gttcaaaacgaaaaacggatgttacaagaagccgttgatgctttgattgataacggtcgt
cgtggccgtccagttgctggtccaggaaatcgtccattgaagtctctttcacacatgttg
aagggtaagcaaggacgtttccgtcaaaacttacttggtaaacgggttgattattctggt
cgttctgttattgatgttggaccttcacttaagatgaaccaaatgggcttgccagttcca
atggctttggaattattcaaaccatttatcatgaaagaattggtttctcgtggcttagct
tctaacattaagaatgccaagcgtaagattgatcgtaaagatgacgatgtttatgatgtc
ttagaagacgttatcaaagaacatccagttcttttaaaccgtgcacctactttgcataga
cttggtattcaagcattcgaacctactttagttagtggaaaagcaatgcgtttgcatcca
ttagtttgtgaagcttacaatgccgattttgatggagatcagatggctattcatttgcct
ttatcagacgaagcacaagccgaagctcgtttgcttatgttagctgctcatcatattttg
gcacctgcaaatggaaaaccagttgtaacgccatctcaggatatggttattggtaactac
tggttaactatggaacgtgaaaatagcaacggcgaaggcatgatctttaaagatctcaat
gaaattcgtttagctatgcaaaatggttatgtttctgagcattcacgaattggtttgcaa
gtaagttcaatgccaaagaaaccattcactgatgaacaacgtcagcaaattttggttacc
acagttggtaaagccatttttaatgacattttaccaggtggcttaatttacttgaacgaa
cctactaatgaaaacttggtagatggcacaccagataagtatttcttaaaggctggtgaa
gacatcaaggctttcattaaggatcaaccattgattccaccattcaagaagggattttta
agtgacattattgcgcaagtttacaagcaatataaggttacagaaacttctctacttttg
gatcggatgaaggaccttggctatgatatttcaacaaaatctggcttaacagttgggatt
gctgatattaccgacttgaaggaaaaaccagaaatcgttaatgctgctcataaacaagta
gctacggttacaaaacaattccgtcgtggtttaattactgatgacgaacgatacgaacga
gttgttggaatttggaacgatgctaaagatgctattcaacaaaaattgatggagagtttt
gatcctcaaaatccaatttacatgatgagtgattctggtgctcgtggtaacatttctaac
tttactcagttagctggtatgcgtggattgatggctgcccctaatggtaaaattatggaa
ttaccaattctttcaaatttccgtgaaggactttctgttttggaaatgtttatttcaact
catggtgctcgtaaaggtatgactgatacggcccttaagacggccaactcagggtacttg
actcgtcgtttggttgatgttgctcaagacgttattgtgcgtgaaaaagattgtggaacc
gaccgtggtttaacaatttcatcaattgttgatggtaatgaagtgattgagtccttgtat
gaccggatcttaggccgttacacacaaaaatcagtttataatcctgaaacaggtgaaaag
atcgttggcaagaacgtcatgattgacgaagatattgctcaaaaagttattgatgctggt
gttgagactgttactattcgttcagcattcacatgtaacacgcgtcatggtgtttgtgaa
cgttgttatggacgtaacatgtcaaccggtgaccgtgttgaagttggtgaggcagtcgga
actgttgctgctcagtcaattggtgaacccggaacacagcttactatgcgtaacttccat
actggtggtgtggctggtaacgaagatattacccaaggacttcctcgtattcaagaaatt
gtggaagcacgtaatcctaaaggtcgtgcggaaattactgaagttacaggtactgttgaa
tcagttgaagaaaatcccgcagaacgtactaaagaaattacgatcaagggtgaaactgat
accagaacttatactttgccaatcacagctcggatgaagattgcagaaggcgactttatt
catcgtggttctgcaatgaatgaaggctcaatcgatcctaaggaaatgttgaaagttcgt
gatgtactttcaactgaaacttatttattgggtgaaattcagcgtgtttaccgtatgcaa
ggtgtagaaatcttggataagcatgtggaaatcatggttagacagatgcttcgtaagatt
cgtgttatggatcctggcgatacagatgttcttcctggtaccctgttagatatcaatgat
ttcaaagatgctaactacaagacattaattgccggtggcattccagcgactgcccgtcct
gttttacttggaattactaaagctgctttggaaacaaatagtttcttgtcagctgcgtca
ttccaggaaacaacccgagtattaactgatgctgcaattcgtggtaagaatgatccactt
gttggtttgaaggaaaatgttattatcggtaagatcattcctgctggaacagggatgcct
gattaccgtaagattattccaaagaccgttggtggaaaagtggcagaacctaagtcactc
agcgatgttgaaaaagaaatggatactgaaacatctaaatag
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integrated database retrieval system
