Pediococcus inopinatus: PI20285_04565
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Entry
PI20285_04565 CDS
T05337
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
pio
Pediococcus inopinatus
Pathway
pio03030
DNA replication
pio03430
Mismatch repair
pio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PI20285_04565 (polC)
03430 Mismatch repair
PI20285_04565 (polC)
03440 Homologous recombination
PI20285_04565 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pio03032
]
PI20285_04565 (polC)
03400 DNA repair and recombination proteins [BR:
pio03400
]
PI20285_04565 (polC)
Enzymes [BR:
pio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PI20285_04565 (polC)
DNA replication proteins [BR:
pio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PI20285_04565 (polC)
DNA repair and recombination proteins [BR:
pio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PI20285_04565 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
DNA_pol_A_exo1
HHH_3
DEDDh_C
DUF6120
T2SSK
Rubredoxin
Auto_anti-p27
PolyA_pol
Motif
Other DBs
NCBI-ProteinID:
AVK99971
UniProt:
A0A0R2IF76
LinkDB
All DBs
Position
complement(902926..907254)
Genome browser
AA seq
1442 aa
AA seq
DB search
MSLNTSEQFQKLLEQIDYPQPNEPSFAEAEIKKVVVHKKSKTWAFSFRFKECLPFPIFQE
FYNHLQVAFSSIATVSFEIETQSSKLDSHLIANYWDWIVKNSHISSPLTQELCGHNLPYM
NDGRVIFAAQNEVVQGFLTSTALGPIESTYKQYGFPEFSIHTIVDDSDSQSMIKELKAKK
EKSDAALAQKASQAILKQTEKRQKKAANGIPDGGPVRIGKQINPDAEVTRLEQITQEERS
VVVEGYIFDAEVRTLRSKRQLLIFKVTDYSSSITVKKFSKNESEEQLFSTIQKGLWVKVR
GSIQEDTFMRDLTLNAYDVMEVSHPTRQDTAPADKKRAELHLHTNMSQMDATNNITDFVK
QAAKWGQKAIAVTDHSGLQAFPDAYAAGKKNNVKILYGVEANLVDDGVPIGYNDKKVALK
GATYVVFDTETTGLSAIYDKVIELSAVKMQDGNVIDQFEEFIDPGFHLSDVTTNLTSITD
QMVHGSKSEKEVFSLFRDFYKDAIIVGHNVTFDIGFMDTGYARYDMPPITNPIIDTLTLA
RFLYPTLKSYRLNTLAKKFGVSLEHHHRAIYDAESTGHLCHLFLKDAEDRYHINYHSQLN
EHMTENDAYKHARPAHAVLIAQTQAGLKNLFRLVSLSNVKYYYRVPRIPKSELERLRDGI
LVGSACSTGEVFTAMMQKGKEEAKQKAKFYDYLEVMAKPVYQPEIEQGLIQDNRHLEEII
SNIVDLGKELKKPVVATGDVHYLNPEDYIYRKILINSQGGANPLNRSKLPDVHFRTTNEM
LDEFAFLGKEKAEELVVTNPGKIVDMVTDVKPVKDKLYTPKMPGAEDQIEKLTMDKAHEL
YGDPLPQLVKERLDKELKSIIGNGFSVIYLIAQRLVHKSNKDGYLVGSRGSVGSSLVATM
SGITEVNPLPPHYRCPNCQYTKFYTKGEYGSGFDLPDEVCPNCQTPLVGDGQDIPFETFL
GFKGDKVPDIDLNFSGDYQPIAHNYMQVLFGKKNVFRAGTIGTVADKTAYGYVKAYERDT
EQTFRNAEIDRLSSGATGVKRTTGQHPAGILIVPDYMDIYDFTPIQYPADDQSAAWETTH
FDFHSIHDNILKMDILGHDDPTMIRALQDLSGIDPKTIPTDDPGVMKLFTGPEILGVTAE
QIQSKTGTFGVPEFGTRFVRGMLEETHPTTYAELLQISGLSHGTDVWLGNAEELIKAGTV
TLKDVIGCRDNIMTDLIHYGMDSQTSFQIMESVRHGRGIPDGDEDKMRNSNVPEWYIDSC
GKIKYMFPRAHASAYVLMALRIAYFKVYFPILYYSAYFSVRADDFDLVSMSHGKDAVKKA
MKDINDKGMDASTKEKNLLTVLELANEMIERGFTFKMVDVNKSDASQWLIDGNSLLAPFN
AVPGLGLNVAKQIVAAREDKPFLSKEDLSKRGKVSKTLIDFMTENGVLADLPDENQLSLF
DM
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttaaatactagtgagcaatttcaaaaacttctcgaacaaattgactatcctcaa
ccaaatgagccaagttttgctgaggctgaaatcaaaaaagttgttgtgcataaaaaatca
aaaacgtgggctttttcgtttcggtttaaagaatgtttgccattcccaattttccaagag
ttttacaatcatttacaagtagcttttagctcaattgctactgtctcgtttgaaattgaa
actcaaagttcaaaattggatagtcatctaattgcaaattattgggattggattgttaag
aacagtcatatttcttcgccgcttacgcaagaattgtgtggccataacttaccatatatg
aacgacggacgggtaatctttgcggcacaaaacgaagttgttcaaggttttttgacttcg
acggcgctaggaccaatcgaaagtacttataaacaatatgggtttcctgaattttcgatt
catacaattgttgatgattcagattcacaaagcatgattaaggaattaaaggcgaaaaag
gaaaaaagtgatgccgcattagctcaaaaagcttcgcaggcgattctaaaacagactgaa
aaacggcaaaaaaaggcagctaacgggattcctgatggcgggcctgtacggattggtaaa
caaattaatccagatgccgaagtcacacgtttggaacagattacacaagaagaacgttca
gttgttgttgaaggatatatttttgatgcagaagttagaacgttgcggtcaaaaagacaa
ttactgatttttaaagttaccgattacagttcttcgatcaccgttaaaaaattctcaaag
aatgaatccgaagaacaattgttttctaccattcaaaaagggctttgggtaaaagtacgt
gggagtattcaagaagatactttcatgagagatcttacgctgaacgcttatgatgtaatg
gaagtaagtcatcccacacgacaagatacagctcctgcagataagaaacgtgcagagctg
catttacatactaatatgagtcaaatggatgcgacaaataatattacggattttgtgaag
caggcggctaagtggggacaaaaggcgattgcagtgacggatcactctggcctacaggct
tttccggatgcatatgctgcgggtaagaaaaataatgtcaaaattttatatggtgtagaa
gctaacctggttgatgatggggtgccaattggttataacgataaaaaagtggcgttaaaa
ggtgcaacctatgtggtatttgatactgaaacgacggggctttctgcaatttatgataag
gtaattgaactttctgccgttaaaatgcaggatggaaatgtgattgatcaatttgaagaa
tttattgatcccggttttcatttatctgatgtcacaactaatttaacaagtattacagac
caaatggttcatggatctaaatccgagaaagaagttttttctctgtttcgggatttttat
aaagatgccattatcgttggccataacgttacatttgatattggttttatggatactggc
tatgcacgttatgatatgccacccatcactaatccaattattgatacattgacgttggcg
cgtttcttgtatccaacccttaaaagttatcgtttaaatacacttgctaaaaaattcggc
gtcagcctagaacatcatcatcgtgcgatttatgatgcggaatcaaccggtcacttgtgt
catcttttcctaaaagatgcagaagatcgctatcatattaattatcatagccagttgaat
gaacatatgactgaaaatgacgcgtataaacatgcacgtccagcgcatgcagttttgatt
gcgcaaacccaggccggattaaaaaatctgtttcgattagtttcgctttccaatgtaaaa
tattattatcgcgtgccaagaatacctaagtctgagttggaacggctgcgagatggtatt
ttagttgggtcggcatgcagtaccggtgaagtctttacagccatgatgcaaaaaggtaaa
gaagaagccaaacaaaaggcgaagttttacgattatttagaagtaatggcaaaaccggtt
taccagccagaaattgagcaaggattgatccaagataatcggcatctagaagaaattatc
tctaacatcgttgatcttggaaaagaattgaaaaaacctgttgtcgcaacaggcgatgtt
cattacctaaatccagaagactatatttatcgaaaaattttgatcaattctcaaggcggg
gccaatccgctcaatcggtctaaattacctgatgtgcattttcgaacgactaatgaaatg
ttagacgaatttgcgttcttagggaaagaaaaggcagaagagcttgtcgtcacaaacccg
ggcaaaattgttgatatggtgactgatgtgaaacctgtcaaagataagctttatacgcct
aaaatgcccggggctgaagatcaaatcgaaaagcttactatggataaagcgcatgagtta
tacggagacccgttaccacagttggttaaagagcgtttggataaagaattaaaaagtatt
atcggaaatggtttttctgttatttatttaattgcccaacgacttgttcataaaagtaat
aaagatgggtatttagttggttcacgagggtccgtcggctcaagtttggtagcgacaatg
tctggaattactgaagtaaatccattaccaccgcattatcgctgtccaaattgccaatac
accaagttttataccaaaggagaatatggttctggatttgatttacctgatgaagtttgc
ccaaattgccaaacacctttagttggtgacggccaggatattccctttgaaacattctta
ggttttaagggagacaaagttcctgatattgatttgaatttctcaggcgattatcaacca
attgcccataattatatgcaggttttatttggaaagaagaacgtttttagagctggaaca
attggaacggtggctgataaaacggcttatgggtatgttaaggcatacgagcgtgatacc
gaacaaaccttccgaaacgctgaaattgatcgactttcgagcggtgccactggtgttaaa
cgaacaaccgggcaacatcctgccggaattctaatcgtgccagactatatggatatttat
gatttcacacccatccagtatcctgctgatgatcagtcggcagcttgggaaacaactcat
tttgacttccattcaattcatgacaacattttgaagatggatattttgggacatgatgat
ccgaccatgattcgtgctttacaagatctttctgggattgatccaaaaacaattccaact
gatgatcctggagtaatgaaattatttactggtccagaaattctgggagttacagccgaa
caaattcaatcaaaaacaggaacctttggtgtgcctgaatttgggacgagatttgtgcgg
ggcatgttggaggaaacccatcccacaacttatgctgaattgctccaaatttctggttta
tcccatgggacggatgtttggttgggcaatgcagaagaattaattaaagcggggactgta
accctgaaagatgtcattggttgtcgtgataatattatgaccgatttaattcattacgga
atggattcacaaacttcttttcaaattatggaaagtgttcgtcatggacgaggaattcct
gatggtgacgaagataaaatgcgtaactcaaacgtgccagaatggtacattgattcttgt
ggaaagattaaatatatgtttccacgagcgcatgcttcagcctatgtgttaatggcactt
agaattgcctatttcaaggtctatttcccaattctttattacagtgcatactttagtgtt
cgtgctgatgattttgacttagtttctatgtcacatggcaaggacgcggttaaaaaagca
atgaaagatatcaatgataaaggaatggatgcttcgacaaaagaaaaaaatcttttgacg
gtgttggaattagccaatgagatgatcgaacgtggattcacgtttaagatggttgatgtc
aataaatctgatgcttcccaatggttaatcgatggtaactctttattagcaccttttaac
gctgttccaggtttaggcttaaacgttgctaaacaaattgttgcagctcgtgaagataag
ccgtttctttcaaaagaagacctttccaaacgtggtaaagtttcgaagacgttaattgac
tttatgacagagaatggtgttttagctgatttgcctgatgaaaatcaattatctttgttc
gacatgtag
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