Pediococcus inopinatus: PI20285_05165
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Entry
PI20285_05165 CDS
T05337
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pio
Pediococcus inopinatus
Pathway
pio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI20285_05165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pio03019
]
PI20285_05165
Messenger RNA biogenesis [BR:
pio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PI20285_05165
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GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
BHD_3
Motif
Other DBs
NCBI-ProteinID:
AVL00081
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Position
complement(1019394..1021106)
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AA seq
570 aa
AA seq
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MSNSIKIIPFSGVRENGKNMYAVEVNDAIYILDCGLKYPENELLGIDVVIPDFSYLEDHS
DKIVGVFLTHGHADAIGALPYFLDKFPVPVFGSEMTIALAKLNVEKDPKLKQFSDFHIVT
EKMEIDFGDVTVGFFRTTHSIPESLGIVLKTPEGQIVYTGDFKFDQTASPEYATDFGRLG
QIGANGVLALLSESANDENPKPSTNERDIANYILETFKYHQGRIVVASVASNILRIQQVL
DAAAQSDRKVVLTGHDLEKIVNTALSLNKLHLPDENIIVPFNKLASLDKDRTVILETGKM
GEPIKALQKMSNDPGKGVHIEAGDLVFITTTPSHAMETTVAKTKNMIYRAGGEVKAISDD
LNASGHASKNDLQLMINLLNPKYLIPIQGEYRLLNTHAQLAREVGMADDHIFLTQKGDVL
EYKNNEMHLGEGIEVGDTMIDGIGVGDIGNIVLRDRKILSDDGIFIAVVTIDRKKKLIIG
EPKVTSRGFVYVNNTDQDILKKSGSIVTEAVQNNLDNKEFDWGHLKQDIREKISRYLFEQ
TKRHPVILPVIMEVNQHHHKIVKKAPAKEA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatagtattaaaataatcccattcagtggggttcgtgagaatggcaaaaatatg
tatgccgttgaagttaatgatgccatttatattttggattgtggcttgaagtacccggaa
aacgagttattaggaattgatgtcgtcattcctgatttttcgtatttggaagatcatagt
gacaaaattgtgggtgttttccttacccacggtcacgcagatgcgattggagcattgcct
tactttttagacaaatttccagtgcctgtatttgggtcagaaatgacgattgcactagct
aaattaaacgttgaaaaagatcctaaattaaagcaatttagtgatttccatattgttacc
gagaaaatggaaattgattttggtgacgtgacagttggtttctttaggacaacccattca
atccctgagtctttaggcattgttttaaaaacaccagaagggcagattgtctacacgggt
gactttaaatttgatcagacggcctcaccagaatatgcaacagattttggtcgtttaggt
caaattggagcaaatggtgtcctcgctttattgagcgaatctgcaaatgatgagaatccc
aagccttcaactaatgaacgagatatcgcgaattatattctggaaacttttaagtaccat
caaggacgtattgtggtggcctcagtagcttcgaatattttacggattcaacaggtttta
gacgctgctgcgcaatctgatcggaaagttgttttgactggtcacgatttggaaaaaatt
gtaaacacagctctaagcttaaataaattgcatttgcctgatgaaaatattattgtgccg
ttcaataaacttgctagtttagacaaagaccggacggttattttagagactggcaaaatg
ggcgaaccaattaaagctctgcaaaaaatgtctaacgatcctggcaaaggtgttcatatt
gaagccggagatttagtgtttatcacaacgacgccatcccatgcaatggaaaccactgtt
gcgaaaacgaaaaatatgatttatcgtgctggcggtgaagttaaggcgatttctgatgat
ttgaatgcttctggtcatgctagcaaaaatgatttacaactgatgattaatcttttgaat
ccaaaatacttaatcccaattcaaggagagtatcggcttttaaatactcatgcgcagctt
gctcgtgaagttggtatggcagatgaccatatattcttaacccaaaagggcgatgtctta
gaatataagaataatgaaatgcatttaggtgagggaattgaagttggtgacaccatgatt
gatggtatcggtgtcggtgacattggtaacattgtattaagagaccgaaagattctttca
gatgacgggatatttatcgcggttgtaaccatcgatcgcaaaaagaaactgattattggc
gaaccaaaagtgacgtctcgggggtttgtttacgttaataataccgaccaagatattttg
aagaagagtggcagcattgttactgaagctgtgcaaaataaccttgataacaaagaattt
gattggggtcacttgaaacaagatattcgagaaaaaataagtcgttatttgtttgaacaa
acaaaacgacacccagtgattcttcctgtaattatggaagttaatcaacatcatcataaa
atagtaaaaaaagctcctgcaaaagaagcgtag
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