Pediococcus inopinatus: PI20285_06180
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Entry
PI20285_06180 CDS
T05337
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pio
Pediococcus inopinatus
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pio03019
]
PI20285_06180
03009 Ribosome biogenesis [BR:
pio03009
]
PI20285_06180
Enzymes [BR:
pio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PI20285_06180
Messenger RNA biogenesis [BR:
pio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PI20285_06180
Ribosome biogenesis [BR:
pio03009
]
Prokaryotic type
rRNA helicases
PI20285_06180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Microtub_bd
MGS
DUF7361
Motif
Other DBs
NCBI-ProteinID:
AVL00247
UniProt:
A0ABZ0Q2I4
LinkDB
All DBs
Position
complement(1215638..1217014)
Genome browser
AA seq
458 aa
AA seq
DB search
MKNGFLEFNLQPFLMSALDEINFTQPTPVQEKLIPVILAGRSVIGQSQTGSGKTHTFLLP
LINQINPSKKQVQVVITTPSRELAYQINAAARQLVGSDEINIEIGNYVGGTDKKRQMDKL
KHRQPQIVIGTPGRIWDLIHSQALDVHLASQFVVDEADMTLDMGFLNEVDKIAASLPKDL
QMMVFSATIPKSLNIFLKKYMSNPVIEEIPVQSIISPTIDNWLISTKSKGKNNVIHQLLT
IGEPYLVLIFCNTKERADELTDYLKQQGLKVAKVHGGVKPRERKRIMKEIHNLDFQFVVA
TDLASRGIDIEGVSMVINDGIPDDLDFFIHRVGRTGRNGMSGTAITLYEPGEEEKVSEIE
KLGVKFQPKAIKNGEVVDSYDRNRRTTRVRDHHKLDPTMVGMVKKKKRKVKPGYKRQIRK
AIEIKDQSDRRKAQHTEFLRTKRQRIKQHRAKRDHGED
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacggttttttagaatttaatttacaaccatttttgatgagcgccttagatgag
attaatttcactcagccaacaccagttcaagaaaaactaattccagttattctggctggc
agaagtgtgattggtcagtcacaaacaggtagtggaaaaacacatacctttttgttacca
ctgatcaatcaaatcaatccgtccaaaaaacaagttcaggttgtcattacaacccctagt
cgagaacttgcttatcagattaatgcagctgcccgtcaattagtgggctctgatgaaatt
aacattgaaattggtaattacgttgggggaactgataaaaaacggcagatggacaagtta
aagcatcgacagccacaaattgttattggaacaccaggaagaatttgggacttaattcat
agtcaagctttagatgtgcatctggcttcacaatttgtcgttgatgaagctgatatgacc
ttggatatgggatttttgaatgaggtagacaagattgccgcaagtttaccaaaagatttg
caaatgatggtcttttcggccactattcctaagtcattgaacatctttttaaagaagtat
atgtcaaatccagtgattgaagagattcctgttcagagtatcattagtcccacaattgat
aactggttaatttctacaaaaagtaaaggtaagaataatgtcattcatcagttgttaaca
attggtgaaccttatttagtgttgattttctgtaacacaaaagagcgtgctgatgagtta
acagattacttgaaacaacaagggttgaaagttgccaaagttcatggtggcgttaaaccg
cgtgaacgtaaacgaattatgaaagaaattcataatcttgattttcaatttgtcgttgcc
actgatttagcatcacgtgggattgatattgaaggtgtttcaatggtcatcaatgacggg
attcctgatgatctcgacttctttattcatcgagttgggcgaactgggcgtaacgggatg
tcaggaacagccattacgctctacgaaccaggtgaagaagaaaaagtttctgaaattgaa
aaattaggggttaaatttcagcctaaagcaatcaagaatggcgaagtcgttgattcatat
gatcgtaaccgccggacaacgcgcgttagagatcaccataagttggatccaacgatggtg
ggaatggttaagaagaagaaacgtaaggttaaacctggctataaacgtcaaattagaaaa
gcgatcgaaatcaaagatcaaagtgatcgtcgtaaagcacaacacacagagttcttgaga
acgaaacggcaaagaattaagcaacatagagcaaaaagagatcatggcgaggattga
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