Pediococcus inopinatus: PI20285_06235
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Entry
PI20285_06235 CDS
T05337
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pio
Pediococcus inopinatus
Pathway
pio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI20285_06235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pio03019
]
PI20285_06235
Messenger RNA biogenesis [BR:
pio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PI20285_06235
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
ZapG-like
Phage_holin_6_1
FUT8_N_cat
FtsX
MS_channel_1st_1
DUF4731
PIGBOS1
Motif
Other DBs
NCBI-ProteinID:
AVL00257
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Position
complement(1230620..1232179)
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AA seq
519 aa
AA seq
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MIVFNIILAIIAIVVGYIIGYYVHKLIQEKNVHDAQDTASGILDNAKKQAATEKKEALLE
AKDESHRYRTRVENELKQRRAEAQKQEERLLQREEVLDHKDNTFEKREDSLERKEEKLSS
EQKRIDEQQQEASSLVTKRTEELERVAAMSQEDAQSLILNEVRDGLADERAKMIRESEEK
AQTDAKKVATDLIAQAIERSAADVATESTVTVVNLPSDDMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVVLSGFDPIRREIAKMALERLIQDGRIHPARIEEMVEKARKDMDDKIRE
VGEQTIFDLGIHSMNPELIKLVGRLRFRTSYGQNVLDHSIEVAKLTGILAAELGEDVTLA
KRAGLLHDIGKAVDHEVEGSHVTIGVEFAKKYKESPVVINAIASHDGDVGAEYVTSVLVA
AADSISAARPGARSDSLENYIHRLEKLENLADGFKGVKKSYAIQAGREIRVIVKPSKISD
LQATTLTHDIRTAIEKQLEYSGKVKVTVIREVRAVNYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgattgttttcaatataatcctcgcaatcatcgctattgttgttggctatatcatcggt
tattatgtacacaaactcattcaagagaaaaatgtgcatgatgcgcaggatacagctagt
ggtattttagacaatgctaagaaacaggcggcaactgaaaaaaaggaagcccttttagaa
gctaaagacgaaagtcaccgctatcgaactcgggtagaaaacgaacttaagcaacgacgt
gcagaagcacagaagcaagaggaacgtttgttacagcgagaagaggttttggatcataaa
gataacacttttgaaaaacgtgaagatagtttggaacgtaaggaagaaaaactaagttct
gagcaaaagcggattgacgaacaacaacaagaagcatcctcattagttacaaaacgtaca
gaagagttagaacgggttgcggcaatgtcacaagaagacgcgcaatctttgattctgaac
gaggttcgtgatggcttggcagacgaacgtgctaaaatgattcgcgaaagtgaagaaaag
gcacaaacagatgctaaaaaagtggcaaccgatctgattgcccaagctattgaaagaagt
gcagccgatgtggctacggaatcaactgttactgttgtgaatctccccagtgatgacatg
aaaggtcgaattattggtcgcgaaggtcgaaacattagaactttagagactttgactggt
attgatttaatcattgacgatacaccagaagcagttgtgctaagtggatttgacccaatt
cgtcgtgagattgccaaaatggcacttgaacggttaattcaggatggtcggattcatcca
gctcgaattgaggaaatggttgaaaaagctcgcaaagacatggatgataagatccgtgaa
gttggggaacaaaccatttttgatcttggtattcactcgatgaatcctgagttgatcaag
ttagttggtcgcttaaggttccgcactagttacggacaaaatgttttggaccattcaatt
gaagttgctaaattaacaggtattttagcagctgaattaggtgaggatgttactttagct
aaacgcgcaggattattacacgatattggaaaagcggttgaccatgaggttgaaggatcc
catgtgacaatcggcgtagaatttgcaaagaagtataaggaaagtccagtggtaattaac
gccattgcttcccatgatggagatgtcggtgccgaatatgtgacttcagtattggttgca
gcagcagattcaatttcagctgctcggccaggagcccgcagtgattctctagaaaattat
attcatagactcgagaagctagaaaatttggctgatgggtttaaaggcgttaagaagagt
tatgcgattcaagccggtcgagagatacgggtaatcgtaaaaccttcaaagatttctgac
ttacaggcaaccacattgactcatgatattagaactgcaattgaaaaacagttagagtat
tctggaaaagttaaagttaccgtaattcgtgaagttcgcgctgtaaattatgctaaataa
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