Pediococcus inopinatus: PI20285_07685
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Entry
PI20285_07685 CDS
T05337
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pio
Pediococcus inopinatus
Pathway
pio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PI20285_07685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pio03400
]
PI20285_07685
Enzymes [BR:
pio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PI20285_07685
DNA repair and recombination proteins [BR:
pio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PI20285_07685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_22
MFD_D3
RecG_dom3_C
IstB_IS21
PTH2
CdvA
Motif
Other DBs
NCBI-ProteinID:
AVL00520
LinkDB
All DBs
Position
complement(1514654..1518160)
Genome browser
AA seq
1168 aa
AA seq
DB search
MNIQNFFAQSQEVQQVLTATIPNSRQLVTGLVGSAKTLLLSELLSAKEAPILTISDNLYH
AQQLTDDLQNILDDAQVHLFPVEETLAASAATSAPIYRGQRTEFLHALIANEPGVYVTSV
SGLRRFLPQKKIMQQAVLEVKVGKEFELTDLEDQLVDMGFVREEMVVRPGDFAVRGSIVD
IYPLNADYPVRIDFFDTEVDSLRYFDSENQRSVKNIETVTILPATDFIVTKAMLQKGIEN
YQKAVEKEKKRLKTDNDIQMLETQAENILARWQDRNVQPEDIVLADYLYDKKDGLLDYMD
DSGVLVFDDYSRILEAERDLQDDDAEWVADKLKKHQVISTEKFGFEVRKLMKEHEQPQIL
LSLFQKGLGRLRLDQLVDLRTRAMQEFYGQMPVLKTEMDRWQKQAQTIVVLIQKKDRLDK
VSSTLRDFEISAVVARDQEVQPRAVTIIQGQLTSGFEYPDANLVVITEHELFAKIPKKRP
KRQKMENAQRLKSYTELKPGDFVVHVNHGIGRYTGMTTMFVDGVHQDYITIQYAGSGKLF
IPVTQLNLVQKYVASEGKHPRLSKLGGSDWAKTKRKVAAKIEDIADELVDLYAQREAEKG
FAFSKDDDYQRQFEDDFAYTETPDQLRSVTEIKRDMERAKPMDRLLVGDVGYGKTEVALR
AAFKAIEDGKQVAFLVPTTILAQQHYETMINRFSGYPVSAGVLSRFRTKPQIKETLAGLQ
NGTVDIVVGTHRLLSKDVKFQDLGLLIIDEEQRFGVKHKEKIKSLKSQVDVLTLTATPIP
RTLNMSMIGVRDLSVIETPPTNRYPIQTYVMEENAGAIRDGIHRELQRGGQVFYLHNRVE
DIEETVSQVEALVPEASVTYIHGQMSEKQMEDVLYDFVQGEYDVLVTTTIIETGVDIPNV
NTLFVENADHMGLSQLYQLRGRIGRSSRVAYAYFTYKPNKVLTEVSEKRLEAIKDFTELG
SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLTDAVNQKQGKKAKVTTDAEVE
LGVEAYLPSTYIEDQRQKIELYKRIRQIENQDQYVEIQEDLIDRFGEYPVEVTNLLAIGQ
IKMLADEALIEKIQRHEDAIQVTLSPRATGKLQQADIFEALSATKLKAMVNVDGGKMQIK
LVIQPKMEEKDWLKQLKEFVEALIKKVA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaacattcagaatttctttgcccaaagtcaagaagttcaacaggttctgactgctaca
attccgaatagtcgtcaattggttacaggactagttgggtccgcaaaaacgcttttgcta
agtgagttacttagcgccaaagaagcgccaattttaacaatttcagataatttgtatcac
gctcagcaattaactgatgatttacagaatatccttgatgacgcacaagttcatttattt
ccggtcgaggaaactttagcggcctcagcggcaactagtgcgccaatttatcgtgggcaa
cgaaccgaatttttacacgcgctgattgccaatgaaccgggagtttatgtgacctctgtt
tcgggattgcgccggttcctccctcaaaaaaagattatgcaacaggctgttcttgaagtg
aaggttggcaaagaatttgagctgaccgatcttgaagatcaattggttgatatgggattt
gtgcgggaagaaatggttgtgcgcccaggagactttgcggtgcgtgggtcaattgttgat
atttatccgctaaacgccgactatccagtgcgaattgatttttttgatacggaagttgat
tctttacgctattttgattcagaaaaccaacgtagtgtgaaaaatattgagacggtgacc
attttgccggccaccgactttattgtgacaaaagcgatgctacaaaaagggattgaaaat
tatcaaaaggcggttgaaaaagaaaaaaagcgtttaaaaaccgataatgacattcagatg
ttagagacccaggcggagaatattttggcccgctggcaagaccgaaatgtgcaacctgaa
gatattgtccttgcggattatctttatgataaaaaagatggcctactggattatatggac
gattctggtgtgcttgtttttgatgactattctcgaatcctagaagccgaacgtgatctt
caagatgacgatgccgagtgggttgctgataaattaaaaaaacatcaagtgatctcaacg
gaaaaatttgggtttgaagttcgtaagttaatgaaggagcatgaacagccacagatttta
ttatcgctattccaaaagggtcttggaagattaagactagaccagttggtagatcttaga
acacgcgcaatgcaagagttttatgggcaaatgccggttttaaaaaccgaaatggaccgt
tggcaaaaacaagcccagaccatcgtggtccttattcaaaaaaaggatcgcctggataaa
gttagttcaacgcttagagattttgaaatttcagcggttgtcgcacgtgatcaagaggtt
caaccaagagccgttaccatcatccaaggacaactaacgagtggtttcgaatatcctgat
gctaatttagttgtgattacagagcatgaattatttgcgaaaattcctaaaaaacggcct
aagcggcaaaaaatggaaaacgcgcaacgacttaagagttacacggaactaaagcccgga
gacttcgttgtgcatgtgaatcacggaattggccgctacactggcatgaccacaatgttt
gtagatggcgtccatcaagactatatcaccattcaatatgccggcagtgggaaactattt
attccggttacacaactaaatttagttcaaaaatacgttgcttctgaaggaaagcatcct
agattaagcaagcttggcggaagcgactgggccaaaacaaaacgtaaagtagctgcaaaa
attgaagatattgctgacgagttggtggatctgtatgcccaacgagaagcagaaaaagga
ttcgccttttcaaaagatgacgattaccagcgccagtttgaagacgatttcgcgtacacc
gagactcctgatcaattgcgcagtgtcacggaaattaaacgagatatggaacgggcaaaa
ccgatggatcgcttattagttggggatgtcggttacggtaaaacggaagttgctttgcgg
gcggcatttaaagcaattgaagatggaaaacaagttgcctttttagtgcccacaaccatt
ttggcgcaacaacattatgaaaccatgatcaatcgatttagtggttatccggtctcagcc
ggagtattgtcccgattccggacgaaaccacaaataaaagaaactttagctggtttacaa
aatggcacggttgatattgtggtgggaactcatcggttattgtccaaggatgtgaagttt
caagatttaggattactgattattgatgaagagcaacgatttggtgtgaaacataaggaa
aaaattaagagccttaagtcccaagttgatgttttgactttaacggcaacgccaattccg
cggacccttaacatgtcgatgattggtgtccgtgatttgtccgtgattgaaacaccacca
accaaccgttatccaattcagacttatgtaatggaagaaaacgctggtgcaattcgcgat
gggattcaccgcgagctgcaacgaggtggacaggttttttatttgcataaccgggtggaa
gatattgaagagacggtaagccaggtcgaagcgctagtgccggaagccagtgtgacgtac
attcatgggcaaatgtctgaaaaacaaatggaagacgttttgtatgactttgtccaagga
gaatacgatgtgttagtgaccacaacgatcattgaaactggtgtagatatacctaatgtg
aacaccttgttcgttgaaaacgctgatcacatgggcttgtctcagctgtaccagttgaga
ggacgcattgggcgaagtagccgggtggcgtatgcctactttacgtacaaacctaataag
gtgttgaccgaagttagtgagaaacgtttggaagctatcaaagattttacggaacttggt
tcaggttttaaaattgctatgcgtgatttatccattcgtggtgctggaaacttactcggc
aagcaacaacatggatttatcgattcagttgggtatgatttatatacgcagatgttgaca
gatgcggtaaatcaaaaacaaggtaaaaaagccaaagtcacaactgatgcagaagttgaa
ttgggtgttgaagcttatttaccaagcacgtacattgaagatcaacggcaaaagattgaa
ctgtataaacgtattcggcaaattgaaaatcaagatcagtatgttgaaatccaagaagat
ttaattgaccgatttggagaatatccagtagaggttactaacctccttgccattggccaa
attaagatgttggccgatgaagcgttaatagaaaaaattcagcgacatgaagatgcaatt
caagtcacgctctctcctcgagcgactggaaaattacaacaagctgatatttttgaagcc
ttgtctgcaaccaagttgaaagctatggtgaatgtcgacggtgggaaaatgcagattaag
ttagtgattcagccaaaaatggaagaaaaagattggttaaagcaattaaaagagtttgtt
gaagcgttgatcaaaaaagtggcgtag
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