Pediococcus inopinatus: PI20285_09060
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Entry
PI20285_09060 CDS
T05337
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pio
Pediococcus inopinatus
Pathway
pio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PI20285_09060
09124 Replication and repair
03420 Nucleotide excision repair
PI20285_09060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pio03021
]
PI20285_09060
03036 Chromosome and associated proteins [BR:
pio03036
]
PI20285_09060
03400 DNA repair and recombination proteins [BR:
pio03400
]
PI20285_09060
Enzymes [BR:
pio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PI20285_09060
Transcription machinery [BR:
pio03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PI20285_09060
Chromosome and associated proteins [BR:
pio03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PI20285_09060
DNA repair and recombination proteins [BR:
pio03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PI20285_09060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
Helicase_C
PDDEXK_1
ResIII
DUF6761
Androglobin_V
DUF6857
Motif
Other DBs
NCBI-ProteinID:
AVL00778
LinkDB
All DBs
Position
complement(1819826..1822195)
Genome browser
AA seq
789 aa
AA seq
DB search
MTAKKIGIRELVEFVLRAGDLNSSSNSQNTALEGARIHRKLQKAGGENYEKEVYVKRTVS
MADEDYVIDGRADGVIQTDDQLLIEEIKTSDPDFEDLSENTLTLYWSQAKVYGAILTHDL
DMPEVTLRLTYYQRTTDKITKTEHTYTHEELQKFFDGLIEEYSSWLVMRSDWRKTRNQSI
KDLDFPFDEYRNGQRDLAVAVYKTVALKKRLFVEAPTGTGKTISTLFPSIKAMGEDLCDR
LFYLTAKQSTRSVAEKGLQLMVEKGLQIKSITLTAKDKIIFPEEVDVAPEDNPYMIGYYD
RLKDGIRDVFENENQITRPTIEKYAKKHTLDPFEFSLDISTFVDVIICDYNYLFDPIVYL
QRFFTQPDDSNFFLVDEAHNLVSRSRDMYTAEVDDRVTDDLIKAGKTASKNEDIQGITNQ
LKKVQTVFDQVKLPLTEQHKTQAITTEELTGFRHGLEKFNTFVSDWLAKQAPTPFTSQIL
DFYFTLLRYVKISAFYDESYRVIVTINDDQSVSVKELCLDPSPYLDMSLKMGRGVVFFSA
TLSPMDYFKETLGCAENGLTLQLTSPFIEKRQNILITQYVNTTYRQRENSLANIVSSIFE
MVNAKKGNYLIFCPSYKYMTQIEDAFLQKYQQFNVIEQSNQMNEEARQEFLDAFAKNYPH
SLIGFSVLGGIFSEGIDLVGDYLIGVAIVSVGLPGLSDERNLIRDYFDQKNGKGFEYAYQ
LPGMNHVLQAAGRLIRSDQDAGNVLLMDNRFSSQRYTQLFPRHWQNYQRVYSIDQLAKNV
QEFWQNLNE
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgacagctaaaaaaataggtattcgggaactagttgagtttgttctccgtgctggtgac
ctgaattcttcgagtaatagtcaaaatacggctttagaaggagctcgaattcaccggaag
cttcaaaaggcgggtggcgaaaactatgaaaaagaagtttacgtgaaacggacagtttcc
atggccgacgaagactatgtgattgatgggcgcgcagatggtgtgattcaaactgatgat
caactcttaatcgaagaaattaaaacgtcggatcctgatttcgaggatttatcagaaaat
acactgaccctttattggagtcaggccaaagtttatggagccattttgacccatgatttg
gatatgccagaagttactttacgcctaacgtattaccaacggacaactgacaaaatcacc
aaaacagagcacacctatacacacgaagaacttcagaaattctttgacggcttaattgaa
gagtatagcagctggctagtcatgcgcagtgattggcggaaaacgcgaaatcaaagtatc
aaggacctagatttcccatttgacgaatatcgcaatggccaacgagatttggcggtggcg
gtctacaagacggttgccttgaagaaacggttatttgttgaagcacccacgggaacgggc
aagacgatttcaaccttatttcctagtattaaagcgatgggtgaagatttgtgtgatcgc
ttattttatctaaccgccaaacaaagtacccgtagtgttgcggaaaaagggctgcaattg
atggtggaaaagggtttgcagatcaaaagtattacgttaacggccaaagataaaatcatt
tttcctgaagaagtggacgttgcaccagaagataatccatatatgattggctactacgat
cgcttgaaggatggcattcgcgacgtttttgaaaacgaaaatcaaattacgcggccaacc
attgaaaagtatgcgaagaaacatactttagatccgttcgagttttcactagatatttcg
accttcgtggatgtcattatctgtgactacaattatctgtttgatccgatcgtgtatctg
caacggtttttcacccaacctgatgattctaattttttcttggttgatgaagcccataat
ttagtgtcgcgatcgcgtgatatgtatactgccgaagtcgatgatcgggtaactgatgat
ttaattaaagctggcaaaacggctagtaaaaacgaagatattcaaggaattaccaatcag
ttaaagaaagttcagacggtttttgatcaagtaaaacttcccttgacggaacaacacaaa
acccaagcaataacgactgaagagttgactgggtttcgacatgggttagagaagttcaat
acttttgtgtcagattggttggcgaaacaggcgccgaccccttttacctcccaaatatta
gatttttatttcaccttattaaggtacgtcaaaatttcagctttctacgatgaaagttat
cgcgtgattgtgacaattaatgatgaccagagtgtaagcgtgaaagagttgtgtttggat
ccgagtccgtacttagacatgtcattaaaaatggggcgtggggtggtcttcttttcggcc
acgttatcaccaatggattattttaaggaaacgttgggatgcgccgaaaacggactgacg
ttacagctaacttcgccatttatagaaaaacggcaaaatattttgattacgcaatatgtc
aatacaacctatcgacaacgagaaaatagtttggccaacattgtttcaagcatctttgaa
atggtgaatgccaaaaagggaaactatcttattttttgcccgtcatacaaatacatgaca
caaattgaagacgcctttcttcaaaagtatcaacaattcaatgtgattgagcaaagcaat
cagatgaatgaagaggcccgccaagaatttctcgatgcgtttgcgaaaaattatccgcat
tcgttaattggttttagtgtgctgggtggtattttttctgaaggaatcgatttggtgggt
gattacttgattggggtggcaattgtgagtgttggcttgccgggattgagtgatgaacgc
aatttaattcgagactactttgaccaaaaaaatggcaaaggatttgagtatgcttatcaa
ctaccggggatgaaccatgtcctgcaggcggcgggacgcttgattcgtagtgatcaggat
gccggcaacgtactcttgatggacaaccggtttagcagtcagcgctatacacagctgttt
ccacgacactggcaaaactatcagcgggtgtattcaatcgatcagttggcaaaaaatgtt
caggaattttggcaaaatttgaatgagtaa
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