Pediococcus inopinatus: PI20285_09455
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Entry
PI20285_09455 CDS
T05337
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pio
Pediococcus inopinatus
Brite
KEGG Orthology (KO) [BR:
pio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pio03400
]
PI20285_09455
Enzymes [BR:
pio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PI20285_09455
DNA repair and recombination proteins [BR:
pio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PI20285_09455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
PDDEXK_1
AAA_12
ResIII
AAA_30
Vasculin
T2SSE
DUF932
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AVL00851
LinkDB
All DBs
Position
complement(1900479..1904243)
Genome browser
AA seq
1254 aa
AA seq
DB search
MGKTSFTPDQERAINHSGHNVLVSASAGSGKTSVLVQRVIKKILNGTDVDKLLVVTFTEA
AAKEMHDRIQNAINDQIRVEKEADQRRHLIAQLTKLNTANISTIHAFCLSIIKRYYYVID
LDPVFRLLTDDTEGVLLREEVWNDLRESLYESEGELFSQLTANFSNDRSDDGFTDLMLRL
YDFANATPDPNKWLAKLPEVYQINGKLNDTEFYQNQVLPVVKFELENSLEEARSLQNIMQ
DGNEDLEKFQPVIDDDVNQIQDVLTNGLSDWDTLRGKLKSLEFGKILGGKRTDEVKEFKE
RVKEIRGDSKNKNGYKIRLQELVQKYFSLNEVQMIDVLKKSESLVQELCKVTLAFKDAYA
VEKRRRQILDFSDLEHFAMRILNGSSQESKSARAAYQRQFSEVIVDEYQDINPLQEAILT
SVTSDEPGNMFMVGDVKQSIYAFRLADPHLFIGKDQSYQDEDAPGERIILSQNFRSIQNV
DDFTNLIFEQLMDQNLGEIPYDEDAKLVYGAKYYPETASKGTEILVYDDEKTESASSIPE
TDSFEIDDKSRGQVAVAGQRIKQLVEEKTMIFDKDEKKERRLTYSDVVLLTPTRKNNLTI
VALFKQMGIPVVVNDAQNYFQTTEIAIMMSLLKIIDNPYQDIPLVAVLRSPIVHLNENEL
AFLRINNKTGDYFQAVMDFYNHFDSQSSQPFQAEVYQKVGHFLEQLTHFQDIANQNQLAT
LIWTIYNETGFLDYVGGMPAGQQRQANLHALYDRTKSYEQTSFKGLFQFVRFIERMQKRS
KDLAEVPINSDEAAVQVMTIHGSKGLEFPVVFLMDASHKFNTDSMKGKYILDSKEGIGIT
YLDPRTRLQVDTPQKLTIIDHVKRNGLAEEMRQLYVALTRAQQKLIIVGSCDSQEKLLKK
WQSAWRSDQLLLTESTRLGTNNFLDWIGEALIRHPQFNLESEGESPLAALSGDQSKFEVQ
FKTKVDLQKIVGIQTDQEQKDWWEEFEKATNDLDVTTLSTHQIDQVLNFKYPHEVATQTT
AYQSVSEVKRLFDDPDSLEMTLSTVEADHKLKTQNRYVSSNLATPKFLQTTVKPKPTEIG
TATHLILQEIPLTEMPTEKSVEDLIGQLVMNKVLMPEVANLVDIDNILRFFDSSLGQILL
DTPDKVHREVPFSLLMPAKQLFNGFKDFSNDEETQILIHGIIDGYVELDDRAILFDYKTD
YVKPGSTKNGVQNIISRYAGQVNLYAAALTDILKHPVEERYLYLLSIGELVEVH
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaactagtttcacaccagaccaagaacgcgcaattaaccatagtgggcataat
gtgcttgtctcagcttctgccggttccggtaaaacgtctgtcttagttcaacgggttatt
aaaaagattttaaacggtacagatgttgataaactcctggttgttaccttcacagaggct
gccgcaaaagaaatgcatgatcgcatccaaaacgcgattaatgatcaaattcgggttgaa
aaggaagccgatcaaaggcgtcatttaattgcgcaacttaccaaattaaatacggccaac
atcagtactattcatgcattttgcttatcgattattaaacgatattattacgtcattgat
ttagatccagtttttcggctgctgactgatgatacagaaggcgtgcttttgcgtgaggaa
gtctggaatgatctgcgtgagtcactctatgaatctgaaggagagcttttttcgcaactg
acagccaatttttcaaacgatcgaagtgatgacgggtttaccgacttaatgttacgtcta
tatgattttgcgaatgccacgccagatccaaataagtggctggcgaaattaccagaagtc
tatcaaataaacggtaagcttaacgacacagaattttatcaaaaccaagtgttaccagtt
gtaaaattcgaattagaaaatagcttagaagaggcacgttcacttcagaacataatgcag
gatggaaatgaagatttagaaaaattccaaccggttattgatgatgatgtgaatcaaatt
caagatgttttaactaatggattaagtgattgggatacgttacgtggcaaactgaaaagt
cttgaatttggaaaaattctgggcggaaaacggactgacgaagttaaggagttcaaagaa
cgagttaaagagattcgtggagattctaaaaacaagaatggttacaaaattcgcctgcag
gaattagtccaaaaatatttcagcttaaatgaagttcaaatgatcgatgttttaaaaaaa
tcagagagcttagtgcaggaactatgcaaggttacacttgcttttaaagatgcttacgca
gttgagaaacgtagacgacaaatcttggattttagtgatctggaacattttgccatgcga
attttgaatggtagttcacaagagtcaaaaagtgcgcgtgctgcatatcaaagacaattt
agtgaagtaattgtggatgagtatcaagatattaatccactacaagaagctattttgaca
agtgttactagcgatgaaccgggtaatatgtttatggtcggggatgtcaaacaatccatt
tatgctttccgtttggcagatccacatttgtttattggaaaagaccaatcatatcaggat
gaagatgcacctggtgaacgaataatcctatctcaaaactttcggtccatccaaaatgtg
gacgattttacaaatctgatttttgaacaattaatggatcaaaatttaggtgaaattccg
tatgatgaagatgctaaacttgtttatggagcaaaatattatcctgaaacagcttcaaaa
ggcacagaaattctcgtttatgatgatgaaaagactgaatcagcgtctagcatacctgaa
actgatagttttgaaattgatgataaatcgcggggccaagtggcggttgctgggcaacgc
atcaaacaactagttgaagaaaaaacaatgatctttgataaggatgaaaaaaaagagcga
cggttaacctacagtgatgttgtgctattaacgccgaccagaaaaaacaatttaacgatt
gtggccttatttaaacaaatgggaattcccgttgtggttaacgatgcccaaaattatttt
cagacgacagaaattgcaattatgatgtcactcttgaaaattatcgacaatccgtatcaa
gatattccgttggttgctgttttacgttcaccaattgttcatttgaatgaaaatgaattg
gcctttcttcggattaataataaaacgggtgattattttcaagcagtaatggatttttat
aaccactttgattcgcagtctagtcagccttttcaagcggaagtttatcaaaaggttggt
cactttttagaacaactaacccactttcaagacatagccaatcaaaatcaattagctact
ttaatttggacaatttacaatgagactggttttcttgattatgttggaggaatgccggct
ggacaacaacgacaagcaaacctgcatgctttatatgatcgtacgaaaagttacgaacag
actagttttaaaggtttgtttcagtttgttcggtttattgaacggatgcaaaaacgaagc
aaggatttggcagaagtgccaattaatagtgacgaagcagcggttcaagtcatgaccatc
catggaagcaaggggctcgaatttccagttgtatttttgatggacgcctcgcataaattc
aatacggattccatgaaaggaaaatacattttagactccaaagaaggaattggaattact
tacttagatccaagaacacgcctacaagttgatacaccgcagaagctgacgattattgac
catgttaaacggaatggcctggccgaggaaatgcggcaactctacgtggcgttaacccga
gcacaacaaaaattgatcattgttggctcatgtgattcgcaagaaaagttacttaagaaa
tggcaatccgcttggcgaagtgatcagctcttattgacggagtccacacgattagggacg
aacaactttttggattggattggggaagccctaattcgccatccacaatttaatttagaa
tctgaaggggaaagtcctttggcggcgttgagtggtgaccaatctaagtttgaagttcaa
ttcaaaacaaaagtagatctgcaaaaaattgtaggtattcaaaccgaccaagagcaaaaa
gattggtgggaagagtttgaaaaggcgacaaatgatttggatgtcacaactttaagcacc
catcaaattgatcaagtattgaacttcaaataccctcacgaagttgctacgcagactacg
gcgtatcagtctgtatctgaagtgaaacggctatttgatgatccagatagtcttgaaatg
acactttcaaccgttgaagcggaccataaactaaaaacgcaaaatcgttacgtttctagt
aatttagccacaccgaaatttttgcaaaccacagtaaaaccaaaaccaacagaaattggg
acggcaactcatttaattttacaagaaattccgctaactgaaatgcccaccgaaaaaagt
gtagaagatcttatcggccagttggttatgaataaagttttaatgcctgaggttgcaaac
cttgttgatatagataatattttgagattttttgattctagtttaggccaaatattatta
gacacgccagataaggtgcaccgtgaagtaccattttccttgctaatgcctgctaaacag
ctattcaacggatttaaggatttttcaaatgacgaagaaacccaaattctgattcacgga
attattgatggttatgttgaattagacgaccgggctattttattcgactacaagactgat
tacgtgaaaccaggaagtacaaaaaacggggttcaaaatatcattagccgctatgctggt
caagtgaatttatacgcggcagcacttactgatattttaaagcacccagttgaggaacgt
tatttgtatttactttcaattggtgaattggttgaagttcattaa
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