Picosynechococcus sp. PCC 11901: FEK30_10545
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Entry
FEK30_10545 CDS
T10163
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pip Picosynechococcus sp. PCC 11901
Pathway
pip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FEK30_10545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pip03019
]
FEK30_10545
Messenger RNA biogenesis [BR:
pip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FEK30_10545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SipA
Motif
Other DBs
NCBI-ProteinID:
QCS50918
LinkDB
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Position
complement(1968917..1970647)
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AA seq
576 aa
AA seq
DB search
MKIIPLGGLHEIGKNTCVFEYDDEIVLLDAGLAFPTDGMHGVNIVLPDTTYLRENRHKIK
GMIVTHGHEDHIGGISHHLKQFDIPVIYGPRLAMSLLSDKLDEAGVSDRTKLHSVMPRDM
VRIGKNFLVEYIRNTHSIADSFTVAIHTPIGVIIHTGDFKVDFTPVDGEQFDFQRLAEHG
EKGVLCLLSDSTNAEVPGRTPSEASVKPNLDRIFGQAQGRLFVTTFASSVHRVSIILELA
QKHNRKVAVVGRSMLNVISHARNLGYMKCLDELFIPLRQLKSMKDEDVLILTTGSQGETL
SAMTRISHDAHRHIKVKEGDTVVFSANPIPGNTIAVVNTIDRLMMRGAKVIYGKGEGIHV
SGHGAQDDHKLMLALTKPKFFIPFHGEHRMLVKHAQTAQSMGVPEENIVIIDNGDIVELT
EDSIGVTGKVPSGIELVDRSGIVHDSVLQERQQLAEEGVITVAVAIAQDGNLIAPPEIHL
RGVVTAANNKLLHQLIQRNVENVLEDRLAEYKEHGKRSNEDIDWTDIRLEIEASLQRLAR
RELQGEPLVVFLMQVSEQTAVRTQRRRRRPTASLAS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
attaaaattattcccctgggtggtctccacgaaattggtaaaaacacctgtgtttttgaa
tatgacgatgaaatcgtgctgcttgatgcgggactagcctttccgacggatgggatgcac
ggggtcaacattgttctgccagatacaacctatctccgggaaaaccgccacaaaattaag
gggatgattgtcacccacggccacgaagatcacattggtggtatttcccatcacctcaag
cagtttgatattcccgtcatctatggcccccgcctagccatgtctctgctgtccgacaaa
ctagatgaagcaggcgtaagcgatcgcaccaaactccacagcgtcatgccacgggacatg
gtgcgcattggtaaaaatttcctcgtagaatacattcgcaatacccactccattgccgat
agctttaccgtggcgatccatacccccatcggcgtgattattcacacaggggacttcaaa
gtagactttacccctgttgacggtgaacagtttgattttcagcggctcgctgagcatggc
gaaaaaggtgttctctgtcttttaagtgattcgacgaacgccgaagttcccggtcgcacc
ccttcggaagcctcagtgaagccgaatttagacagaatctttggtcaggcccaaggacga
ctctttgtgacgacctttgcctcttctgtccaccgggtcagcattattttagaactggcg
caaaaacacaatcgtaaggtggctgtggtgggccgttccatgctaaacgtcatttcccat
gcccgcaatttaggctacatgaaatgtttggatgagctgtttattcccctgcggcagctg
aaaagcatgaaggatgaggatgttttgatcctgacaacgggttcccaaggtgaaacccta
tcggccatgacacggatctcccacgatgcccaccgccacatcaaagttaaggaaggggat
acggtggtcttttcggccaatccaatccctggcaatacgatcgccgtggtcaataccatt
gatcgtttgatgatgcgcggcgcgaaggtcatctacggtaaaggggaaggaatccacgtt
tctggccacggcgcccaagatgatcacaagttgatgctggccttgacgaagccaaagttt
ttcattcccttccacggggaacaccggatgttggtgaagcacgcccaaacggcccaatcg
atgggggtacctgaggaaaatattgtgattattgacaatggtgacattgtcgaactcacg
gaagactccattggtgttaccgggaaagtgccttcgggaattgaattagtagaccgttct
ggtattgtccatgattcggtactccaggaacgccaacagttggccgaggaaggggtgatt
acggtggccgtggcgatcgcccaggacggtaatctaattgcgccgccagaaattcatctc
cggggtgtagttaccgcagcgaacaataagttactccaccagttaatccagcggaatgtc
gaaaatgtgttggaggatcgcctcgcagaatataaagagcatggcaagcgcagcaacgaa
gacattgactggactgatattcgcctagaaatcgaagcatccctgcaacgccttgcccgt
cgagaattacaaggggaacccctggtggtctttttgatgcaggtcagcgaacagactgcc
gttagaacccagcgccgtcgtcgtcgtcccacagcatcccttgcttcctaa
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