Picosynechococcus sp. PCC 11901: FEK30_12015
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Entry
FEK30_12015 CDS
T10163
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pip Picosynechococcus sp. PCC 11901
Pathway
pip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FEK30_12015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pip03019
]
FEK30_12015
03016 Transfer RNA biogenesis [BR:
pip03016
]
FEK30_12015
Enzymes [BR:
pip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FEK30_12015
Messenger RNA biogenesis [BR:
pip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FEK30_12015
Transfer RNA biogenesis [BR:
pip03016
]
Prokaryotic type
tRNA degradation factors
FEK30_12015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_Dis3
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QCS50095
LinkDB
All DBs
Position
complement(2287959..2290232)
Genome browser
AA seq
757 aa
AA seq
DB search
MDFSIATLLSFFTDDKLVAGKFLEKKLECRSEEDTEQLQIILDALERSNILVKERGKYRR
VPEADVVEAKLRCSSKGFCFAIQDSEDADDIYIRESYLSNAWNGDRVLVKIIKEGTRRRS
PEGVVRLILERANPSLLARVVQKDEGFRAVPLDDRLLFELELQDETDRLQQAIDHLVHVS
VVQYPIAQYLPQGSVTKVLGSDAEAAADTDIVCCKHDLLRQFPEEVLAAVKDIPTKLTKK
MLAKRRDFRDQLTITIEDEIHLTPENQAFIENAFTLQKTEAGQWQLGIHLADVAEFVPAQ
GVLDRWAKKHGTAVFLGQMTIPLFPPEFKEKVELRPGGDRLTMSILLTFDDQGNVAEFEI
TPSVIRVDQSLSYQKIQHLLSSGETAEAELADVATLLNDLIFNLSPLVKAQRLQRGGFQI
SLPEVTSAFKDEGRFGTMIVSPSLPVRSLLAEVMILAGRAVAQHMLALELPAIYCYQANP
DFESLENLIKLGNNLNLKLKLESEEELLPHDYQHFIQEFSQTDMTKILNYLLQETLDVPR
YGAHPHPHFGLAYRDGYSRVCAPGQRYGDLVMQRILKLIFSEGRDRRSSRVKVGVNLGSS
TCHNQVNWKVLPTPIQTELEETIASLILQLNDQEKVADDAEKDLQGLQKAEKMKAHTGHT
FKGLITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRARHSCLVGRKNRTAYRLGNTV
DVEVKSVDYYRQQIDLAIAKNTNSDPDDAVAENWEEE
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcaatcgccacactgctgtctttctttacagatgacaaattggttgccggt
aaattcctcgaaaagaaattagagtgtcgctctgaggaagatacagaacagctccagatt
attcttgatgccctagagcgctcgaatattttggtgaaggaacggggtaaataccgccgg
gtgccggaagcggatgtggtcgaggcaaagctacggtgttcgagtaagggtttttgtttt
gcgatccaggattctgaggatgctgatgatatttatatccgggaaagttatctcagtaat
gcttggaatggcgatcgcgttttagtcaaaatcatcaaagaaggaacgcggcggcgatcg
ccagagggagtagtccgtttaattttagaacgggccaatccttccctcctagcgcgggtg
gtccaaaaagacgaaggcttccgggcagtgccccttgacgatcgccttttgtttgaactt
gaactccaggacgaaacagatcggctccagcaggccattgatcacctcgtccatgtttcg
gtggtgcaatatcccattgcccagtacctcccccaggggtctgtcaccaaggtgttgggg
agtgatgccgaggccgccgctgacaccgatattgtctgttgtaaacatgatttactgcgc
caatttcccgaggaggttttggctgccgttaaagacattcccacaaaactaaccaaaaaa
atgctcgccaagcggcgggattttcgcgaccaattgaccatcaccatcgaggatgaaatt
cacctcaccccagaaaaccaagccttcattgaaaatgcatttacgctccaaaaaactgaa
gctggacagtggcaactgggcatccacttagcggacgtggcagaattcgttccggcccag
ggtgttttggatcggtgggcgaaaaaacacggcacggcagtgtttctcggtcaaatgacc
attccgctatttccgccagaatttaaggaaaaggtggagcttcgtcctgggggcgatcgc
ctgacgatgtccattctcctcacctttgatgaccaggggaacgtggcagaatttgaaatt
acccccagtgtgatccgcgttgaccagagcctgagttaccaaaagattcagcatctcctc
agtagtggggaaaccgcagaggctgaactggccgatgtggcaaccctgctgaatgattta
atttttaacctcagtcctttagtcaaagcccagcgcctgcaacggggcggtttccagatt
tctctacccgaagtaacttctgcttttaaagatgaagggcgtttcgggacgatgattgtt
tcaccgagcttgccggtgcggtctctcttggcagaggtgatgatcctggcgggtcgagcc
gtagcccaacatatgctggccctagaactgccagccatctattgctaccaagcgaatcct
gattttgagagccttgaaaatctcattaagttgggcaataatctgaacctgaagctcaag
ctcgaatcggaagaggagctgttgccccacgattatcagcactttatccaagagtttagc
cagacggacatgacaaagatcctgaactatctgcttcaggaaaccctcgatgttccccgc
tatggtgcccatccccacccccattttggtctggcctaccgggacggttatagccgtgtc
tgtgcaccgggacaacgctatggtgacttggtgatgcagcgcattttaaaactcattttc
tctgaggggcgcgatcgccgttcgagtcgcgtcaaggtcggggttaacctcggcagcagc
acttgtcataaccaggtgaactggaaagtgctaccaacgccgatccaaacggaattagaa
gaaaccattgccagcctaattttgcaactcaacgaccaagagaaggtggccgatgacgcc
gaaaaagatctccagggactccaaaaggctgaaaagatgaaagcccacacggggcacact
tttaagggattgatcaccggggtgcagtcctatggtttctttgtggaaattgaggatctg
ctcgtggaaggtcttgtccatgtcagttccctcaaggatgactggtacgaatatcgcgcc
cgacacagttgtctagtgggtcggaaaaatcgcactgcctatcgcctcggcaataccgtc
gatgtggaagtgaagagtgtcgattattatcggcaacagattgatctggcgatcgccaaa
aataccaattcagacccagatgacgcggttgcggaaaattgggaagaagaataa
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