Pirellula sp. SH-Sr6A: VN12_00185
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Entry
VN12_00185 CDS
T04360
Symbol
gabD
Name
(GenBank) Succinate-semialdehyde dehydrogenase [NADP(+)] GabD
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir00250
Alanine, aspartate and glutamate metabolism
pir00310
Lysine degradation
pir00350
Tyrosine metabolism
pir00650
Butanoate metabolism
pir00760
Nicotinate and nicotinamide metabolism
pir01100
Metabolic pathways
pir01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
VN12_00185 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
VN12_00185 (gabD)
00310 Lysine degradation
VN12_00185 (gabD)
00350 Tyrosine metabolism
VN12_00185 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
VN12_00185 (gabD)
Enzymes [BR:
pir01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
VN12_00185 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
VN12_00185 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
VN12_00185 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AMV30499
UniProt:
A0A142XU00
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Position
complement(43796..45256)
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AA seq
486 aa
AA seq
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MFDHSMPHPLLRTEAFIGGNWYRGERERRTAISNPATGAVLAEVVDLQQKDLEWAVQCAY
QAFPSWRRMVAGQRALLLRAWYDEIMQHVEPLAEIITLEQGKPITESIAEVRYAASFIEW
FAEEAKRLYGELVPPHMADKRIMVTRQPVGVVASITPWNFPAAMIARKVAPALAAGCTVI
AKPAPQTPFTALALAALAEKAGLPAGVLNVVPTTDSEMAGNLLTSDLRIAKISFTGSTAV
GKKLMAACSGTLKRLSLELGGNAPFLVFDDANLEDAVQGAVASKYRNAGQTCVCANRFLV
HRSVSDVFASKLAAEVQNLRVGNGMMRGVDQGPLINESAVQKVEAHVQDAISKGATLVCG
GKRHPLGGTYFTPTVLTGVNRTMLIAHEETFGPVAPIMTFDSDQEAIDLANDTRAGLAAY
FYTESYQRFWRISEALDYGIVGHNTGLISTEIAPFGGMKESGVGREGSRHGILDYTELQY
ICSHIG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatcactcaatgccccatccgctgcttcgaacggaggccttcattggaggaaac
tggtaccgcggcgaaagggagcgacgaactgcgatttccaatcctgcaacaggggccgtg
ctcgctgaagttgtcgatttgcaacaaaaggacttggaatgggccgtccagtgcgcctac
caagcctttccgtcgtggagacgaatggtagctggccaacgagcgctactgctacgggcg
tggtacgacgagatcatgcaacatgttgagccgttggctgagattatcacattagaacag
ggtaaaccgatcacggaatcgatcgcggaagttcgttatgcagcctcctttatcgaatgg
tttgcagaggaggcgaagcgtttgtacggggagctggtgccaccccatatggccgacaaa
aggattatggtgacgaggcagcctgtgggtgtggtggcgtccatcacaccttggaacttc
cccgctgcgatgatcgctcgaaaggtagcaccggctttagcggccggttgtaccgtgatt
gccaagccagcgccacaaaccccctttacggcgttggccctggcagcacttgccgagaaa
gcaggtttgccagcaggtgtcctcaacgtcgttccgacaaccgattcggagatggctggc
aacttgctcaccagcgacttgcgcattgccaagataagcttcacaggctccacagccgtt
ggcaaaaagctgatggcggcttgctctggcacactgaaacgtctctcgctggaactgggc
ggaaatgctccctttctcgtcttcgatgacgcgaatttggaagatgccgttcaaggcgca
gtggcgagcaagtatcgcaatgcaggacaaacctgtgtttgcgccaatcgattcctggtc
catcgctccgtttcggatgtgtttgcatcgaaactggcagcggaagtccagaacctgcga
gtcggaaatgggatgatgcgaggggttgatcaaggcccattgatcaacgagtcggctgtt
caaaaagtggaggcccatgtgcaggatgcgatcagcaaaggggcaacactcgtttgcggt
ggaaagcgtcatccgcttggaggaacgtatttcactccaactgttctgacaggtgtcaat
cgaaccatgcttatagcacatgaggagacgtttgggcccgtcgctcctattatgacgttc
gattccgatcaggaggcaatcgatctggcgaacgatacccgagccggactcgccgcctat
ttctacaccgaaagctaccagcgtttttggagaatctccgaggccttggactacgggatc
gtaggtcacaataccggtctgatatccacggagatcgctccgtttgggggcatgaaggaa
tcgggggtggggcgagagggctcccggcatggaatcctagactacaccgagctgcagtac
atctgctctcacatcggttag
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