Pirellula sp. SH-Sr6A: VN12_01065
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Entry
VN12_01065 CDS
T04360
Symbol
addA
Name
(GenBank) ATP-dependent helicase/nuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pir
Pirellula sp. SH-Sr6A
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_01065 (addA)
Enzymes [BR:
pir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VN12_01065 (addA)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
VN12_01065 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
UvrD_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMV30674
LinkDB
All DBs
Position
326332..332667
Genome browser
AA seq
2111 aa
AA seq
DB search
MPTPKISHRQRRPLFDLTQSIPPVYLGWEQPILHSASDYLLDQFKRGDSWDLSHCLVVLP
GAYAGRRLATLLAQRAQEMSLILRPPEILTVGKLPEMLYSAKLPFATDLEQTLAWTKVLR
EAESEFLRPLLLELPERSDVRPWIDLAKMLSALHRELSSDLIDFDDVAHEISDARELVRW
EVLSKLQRRYLDELHIAGLWDLQTARRFAIDQKEVNTDKDIILIGAVDLNRAQRRFLDAV
SSQVRVLIGAPLAFESGFHSDGSLIPDFWQDLEIPIDANQIHVRSTPTESAKELGVQLAR
LGGAYSVADVTVGIPDPAIVPILQETASDFGVALRYGPGESIALSPPMKLLETVLDYVAS
NGIEAFNKLVRIPSVERWLGEQPAVAEHLSSEKGSIGLLTALDRYQEKTLIRTVDQLEWP
DVQGKELFQTVVKCLDEWVQPLRVSSMPLEQWAAPIRSVIATAYSQMEINPLDSLGHRYL
RSSQQINVILDEMQSIPQNLDVSVGLAEAYTWLIGQLESIQIPPLHADNEIEMLGWLDLA
HDDAPVLMLTGLQDGIVPESVNGDAFLPNQLRSQLGLMDNARRYARDCYALMTMRMTRQR
FEILFHLLSVDGDPQTPSRLLLAVPVEQLAVRVKWLLEPKTTPLELESAVAWKPRRGQTN
IPIPYPVLKTPIQDMAVTDFKKYDQCPYRFYLGRIEKARAFEHEKLELDGGGFGDLIHKV
LEELHGKPVAKSTDAEEIEVFLKVELERIAKVQFGIQRPPALIIQLEQAQRRLSEFAKKQ
AEWAAKGWEIRWIEHQVEKKDQVVLDLRNGSRMVVHGRIDRIDYHPAEDRYTVWDYKTGD
QTDLPVKNHLKGETWIDWQLPLYGLLIQTLGIRDLSKVSFGYILLPKNPSETQFAIADFT
LEQHRSALESAVEIARKVAAGIFWPPKYKQIHPLDDYNAITQRSVARRWDKELAEQETAA
ESQADTQNEPEYEVSDSATDAAVDQSHVSPKPPSYPCKIELKPVVAQGVAPAEWFSPKMI
LASAGTGKTYNLASRALRLLFTEQSLDSILATTFTRKAAGEILHRVLIWLAKAVDSPDVL
QQIQEVVAPLQIDRSGVIYQLGRLCSQLHRFRVSTLDSFYSQLARSFALELNLPPGWSLS
DPFQYEQLKQEAITRMFETISHSDLRSLISQLSKGEATRSLRREIDSVVSSGYELFRRTT
EDAWKNLHVPNAPDDELVQKAIQVFKASEVKDARYAASRDKTVDWFDREEWGSFLSQTLV
QRASEEVPKFYRAELDPHIVSALRTLAKRAVAGELASRRAQNEAAYHLLKGFHEQLQWVK
TRRRTVTFDDIAERLAQWMRGLVVNKEAEAKGEPDAPENSSAAPSMPTISYRMDCPINHL
LLDEFQDTSPVQWEIVKPFAETIVQNQIDRTSFFCVGDTKQAIYGWRGGVSEIFESVGVQ
IRNVQKEQLVKSFRSSQVVIDFVNDVFTQLDKHPAYGSDDGDGELSGIDAVTHWVSRNFT
KHETAKTTLTGYVELRNANVESKRSSDTDDSETNEFLEEVVDRIAQLHRDAPSIEIGVLA
RTNQEIGSIIHLLRERGVEASQEGGNPLTDSAPVLLVQSAMRVANHPADTLAFFHVTQSP
LANHFLEEERQDANAMSARLRSWIDAFGFGDTVSQLAHTLAPQCNARDQDRLRQLVQLGY
RFDALRVDNIYGFIEFIEQQRVALPGASKIRVMTIHQSKGLEFDAVFLPSLNQGMTARVP
AFVAMLGDRTKPPIGVSRYISGPIQRYLDTPWKIAFQEYQQQQLAEALCLFYVALTRARQ
ALYLYTVPSSSPKKRWGSVLQSLFAKQDQGKSPGILLHSWGDADWYQKSHSQSDASDESD
ERDASEQQAVTEITESISVSKASNAKTLPIRLRGAKANERVISVLRPSQEETADRVVLGT
QWKSYDPSGAIIGKLVHRWFEEITGWIEDFKINKRRLKELAAASLTQEEMQQIRMLEWLD
RFVQYSNQPGVRGVLSSSRYASWIRPRLLRLEVTNERKLLQILDDSLLRGVIDRCVIGYD
GDQVVRAEIIDFKTDQRPNGCSLSDWIDDRKEYHFPQLAIYRRAISDQYRLKENQITIAL
VLLSEDQVIEL
NT seq
6336 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccccgaagatctcccatcgtcagcgtcggccgctattcgatctcacccagtcc
attccacccgtttacttgggctgggaacaaccgattcttcactcggcaagcgactacttg
ttggatcaattcaaaaggggagattcctgggacttgtctcattgcttagtcgtgctacct
ggagcctatgctggacggcgtctcgcgacgctcctagcccagcgagctcaggagatgtcg
ctcattctgcggccgccggagatacttacggtcggcaagctgccagagatgctttattca
gcaaagctacctttcgcaaccgatttggagcagacgctcgcttggacgaaggtgttgcga
gaagcggagtcagagtttttgcgacctctcttgttggagttacctgagcgaagcgatgtt
cgaccatggatcgatctggcgaagatgttgtcagcgttgcaccgcgagctgtcatcggac
ctcatcgatttcgatgacgttgcgcacgagatcagcgatgctcgcgagttggtgcgatgg
gaggttctatccaagcttcagcgtcggtacctagatgagcttcatatcgcaggattgtgg
gatctgcagactgcgcgtcgattcgcaattgaccagaaagaggtgaatacggacaaggac
atcatcctgattggcgccgtagacttgaaccgagctcagcgaagatttctcgatgcggtt
tcctcccaagtacgagtgttgatcggtgctccactcgcgtttgagagcggctttcactcc
gacggatccttgataccggatttttggcaggatcttgagattcccatcgacgcgaatcag
atccatgtacgatcaacccctacggaatccgccaaggagcttggggtgcaattggcgcgt
ttgggtggtgcatactccgttgccgacgtaacggttgggatacccgatccagcaattgtc
ccaattctacaggagaccgcatcggacttcggtgtagcattgcgttacggtcctggagaa
tcgatcgccctgtcgccccccatgaaattactggaaacggtattggattatgttgcatcg
aatgggatcgaggcttttaacaaactggtgcggattcccagtgttgagaggtggttgggg
gaacaaccagcggtagctgagcatctgtcttcggaaaaaggatcgattggattactgaca
gcattggatcggtatcaagaaaagacactgatccgtacggtcgatcagttggaatggcct
gacgtgcagggcaaagaactatttcaaacggttgtcaaatgtttggatgaatgggtgcaa
ccgttgcgagtatcgagtatgcctcttgagcaatgggctgcaccgattcgatctgtcatt
gcgacggcatactcacagatggagatcaacccactcgattcgctggggcatcgctacctt
cgatccagccagcaaatcaatgtcattctcgacgagatgcaatcgattcctcaaaatctg
gacgtttcggttggtcttgccgaggcatatacatggctgattgggcagcttgaaagcatc
cagattccgccgctccatgcggacaatgagattgagatgttggggtggttggatctcgct
catgatgatgctcccgttttgatgctaacggggttgcaggatggaattgttccggagtcc
gtcaatggcgacgcattcttgcccaaccaactgcgcagtcaattggggctcatggacaat
gcacgtcgttacgcgcgcgattgttatgcgttgatgacgatgcggatgacgcgtcagcga
ttcgaaatcttattccatcttttgagcgtcgatggcgatccccagactcctagtcgattg
ttgctcgccgttcctgtcgagcagttggccgtccgagtgaagtggttgttagagccgaaa
acgactccgctagaactcgagtcagctgtcgcctggaagccgaggagagggcaaacgaat
atacccatcccttatccagtgctgaagacgcccattcaagatatggcggtcactgatttt
aaaaagtatgaccaatgtccctatcgcttctatctcgggcgaattgaaaaggccagggca
tttgagcatgagaagttagagctagacggaggtgggtttggagatcttattcacaaagta
ttggaggagttgcacggaaaaccggtcgccaagagcaccgacgcggaagagatcgaggtt
tttctcaaggtggagctggagcggatcgctaaggtgcagttcggtattcagcgtccccct
gcattgatcatccaattagaacaggctcaaaggcggttaagcgaattcgcgaagaagcag
gcagagtgggctgcgaaaggatgggagatccgttggatcgagcatcaagttgagaaaaag
gaccaggtcgtactcgatcttcgaaatggcagtcggatggttgtccatggccggatcgat
cgaatcgattaccatccggcggaagatcgttacaccgtatgggattacaaaaccggagat
caaaccgacctaccggtgaagaatcacctaaagggggaaacttggatcgattggcaattg
ccattgtatggtcttttgatccagactttagggattcgagatctctcgaaagtttccttt
ggttacatacttctcccaaagaatccatccgaaacacagttcgcgatcgcagactttacg
cttgaacagcatcgcagcgccttggaatcggctgtagaaatcgcgaggaaggtggctgcg
ggaatcttttggcctcccaagtacaaacagattcacccattggacgattacaacgccatt
acgcagcgttcggttgcgagacggtgggataaagaattggcggagcaagaaacggccgct
gagtctcaggcggacacgcagaatgaaccagagtatgaggtaagtgattccgccaccgac
gctgcggttgatcaaagccatgtgtcgccgaagcctccgtcgtacccttgcaagatcgag
ctgaagccagtcgttgctcaaggcgttgcgccggctgagtggttttcacccaagatgatt
cttgcttcggcaggtacagggaagacctacaatttggcttctcgtgcgttgcgattgttg
ttcaccgagcagtcgctcgattccatactggctacgacatttacgagaaaagctgcaggg
gagattcttcatcgcgttctgatttggcttgctaaggccgtagatagccccgatgtactc
caacagattcaggaggtcgtggccccgttgcagatcgaccgttccggcgtgatttatcaa
ttggggcgtctctgttcgcagttgcaccgattccgcgtcagcacacttgatagtttttat
tctcagctcgctcgttcgttcgcgttggagctcaatctgccacccggatggagtctgtcg
gatccatttcaatacgagcagctcaaacaagaagcgattacacggatgtttgaaaccatt
tcgcattccgatttacgctccctgatatcgcagctgtcaaaaggagaagcaacgcgaagc
ttacggcgagaaatcgatagcgtcgtttcgtctgggtatgagttgtttcgacgcacaacc
gaggacgcttggaagaacttacatgtccccaacgccccggatgacgagctcgttcagaaa
gcgattcaagtttttaaggcgtctgaggtcaaggacgctcgctatgctgcttcccgtgac
aagaccgtcgattggtttgaccgtgaagagtggggaagctttctctctcagacgcttgtt
cagcgagcgagtgaagaagtacctaagttttaccgggcggagttagacccgcatatcgtc
tcagctctacgaactttggccaagcgagcggttgcgggcgagctagcaagccgacgagct
caaaacgaagcagcgtaccatcttttgaagggttttcatgagcaactgcaatgggtgaaa
accaggcgtcgcaccgttacgtttgatgacatcgcggaacggctggcgcaatggatgcgg
gggctagtggtgaataaggaggctgaagcgaagggcgagccggacgctcccgaaaatagt
tccgcggcacctagcatgccaaccatttcctatcggatggactgtcccatcaatcacctc
cttctcgatgagtttcaggacacttcacctgtgcaatgggagattgtgaagccattcgcg
gagacgattgttcagaatcaaattgatcggacatccttcttttgcgtcggagatacgaag
caagcaatctatggctggcgtggtggggtctccgagatcttcgagtcggtcggagtgcag
atccgtaatgtccagaaggagcaattggtcaagagttttcgcagttcgcaggttgtgatt
gacttcgtcaatgacgtctttacgcagttagataagcaccctgcttacggcagcgatgat
ggcgacggcgaattgagcggcattgacgcagtaacgcactgggtttcgcgaaacttcacg
aagcatgagaccgcgaagaccacgttgactggctatgtggaattacgaaatgcgaatgtc
gaatcgaaacgcagcagcgatacagacgattcagaaaccaatgagtttttagaagaagtt
gttgaccgaattgcccagttgcatcgagatgccccttcgatcgaaatcggagtgctagcc
cgaacgaaccaagagattggctctatcatccacttgctgcgagagcgaggtgtcgaagcg
agtcaggagggaggcaatccattgaccgattccgctcccgttctcttggtgcaaagtgcg
atgcgcgtcgccaatcatccagcagacacacttgcattttttcatgtgacgcagtctccg
ctcgccaaccactttcttgaagaggagcggcaggatgcaaacgcaatgtcggccaggctt
cgatcatggattgatgcgttcggattcggagacacggttagtcaacttgcccacaccttg
gcacctcagtgcaatgcgagagatcaagatcgattgcgccagttggtccagcttggatac
cggttcgatgcattgcgagttgacaatatttatggattcattgagttcattgaacaacaa
agagtcgcgttgccaggggctagcaagatacgtgtgatgaccattcaccaatccaaggga
ctggagtttgacgcagtattcttgccttccttgaatcaagggatgacagcccgagtccct
gcttttgtcgcgatgttgggcgatcgaacgaagcctcctataggggtttcccgttacatc
agtggcccgattcagcgttatctggatacgccgtggaaaattgcttttcaggaataccag
cagcagcaattggcggaggcactttgtttgttctatgtcgcactgacgcgggctcggcag
gctctttacctttacaccgtgcctagttcgtctcccaagaagagatggggatctgttctg
cagtcactgtttgccaagcaagatcaggggaaatcgcctggaatcctccttcatagctgg
ggagatgcggactggtatcaaaagtctcattcgcaatcagatgcttccgatgagagcgac
gagcgagatgcaagcgaacagcaagcagtaacggagattaccgagtcgatatctgtatca
aaggcttcaaatgcgaagacccttcctattcgacttcgcggagccaaggcgaacgaaagg
gtgatctccgtattgcgtccaagtcaggaggagaccgccgatcgggtcgtgctgggaacg
cagtggaaatcgtatgacccgagtggtgcgatcatcggcaaactggtgcaccgatggttc
gaagaaatcacgggatggattgaggactttaagataaataaacgaaggttgaaggaactg
gcggcggcgtcgcttacgcaagaggaaatgcaacagatccggatgctggagtggttagat
cgctttgtccagtacagcaaccagccgggtgttcgaggggtcctgagctcatcgcgatat
gcctcctggattcgtcctcggcttttgcgattggaggtgaccaatgaacgcaaactgctg
cagatactcgatgatagtttattgcgaggtgtgattgatcgctgtgtaattggatacgat
ggcgaccaagtcgtgcgagctgagatcattgatttcaaaaccgatcagcgaccaaatggg
tgcagcttgtcagactggatcgacgaccgaaaagagtatcactttccacagttagcgatc
tataggcgggcgatcagcgatcaatatcgtttgaaggaaaatcagattacgatcgcgttg
gtattgctgtctgaggatcaagtgatcgagttatga
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integrated database retrieval system
