Pirellula sp. SH-Sr6A: VN12_02380
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Entry
VN12_02380 CDS
T04360
Name
(GenBank) outer membrane biogenesis protein BamB
Organism
pir
Pirellula sp. SH-Sr6A
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PQQ_2
PQQ
TPR_19
PQQ_3
TPR_14
TPR_2
TPR_8
TPR_16
Motif
Other DBs
NCBI-ProteinID:
AMV30934
UniProt:
A0A142XVT0
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All DBs
Position
complement(594034..598809)
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AA seq
1591 aa
AA seq
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MDARLRLAFLFGLTTWIGGVLVCNVSFAQFARPRSQQVDSTWMPPSREVLTLLEDAREHV
AASRWSEATLAIGQLLGIESDASNEEFGIDYFLESESPPSQPRDPRFGRIVQGNLFAILY
ELVDQLPDEAMEILDVRHGVEAKKVLDDAVATGDWDRIERLSTRLGFLPVGQDATLLMAQ
RALGQGDASQGAFMLSQLLKQRRAIARFGAALGILGAEAQLLAGNREEAERLLRLVAAQN
PSFRVDWFGTALNWDAATLDNDISKILERLSAKAASQSLKKVDLVVAQPSIVGGNSRRNS
DTRAGVPLPILQWHAELHESSQQKEELLSTLKSQAGMPIEQAGTTIPSRMPICVGRSIIA
STFDQRIVALDLQTGLLQWECVYTGMPLGFSMENIPTRGSIGSEYGVPEYLAKRVWGEAT
IGHLASDGERVYGVSELPSVDVSEAYALGPNARFARQLGIKTYNVLQCWSVPEEGKLLWE
VGGVKSETEPALVNILFLGPPLPYRGELLILGELNGEVALFSLAPDSGKVLWRQPLVVNN
GAVVANDTMRRSIGATPSADGNLIVCPTLSGHLVAFDLHTRSLQWGLAYRSKVSTAGAMT
GTFGGMELGIFEPFDSRSVDLAPVIAEGVALYAPPDGFGVYAVELQTGERRWHALDSQDR
KIRYVGCVAGQTAIIVCQNAIYGLDLQTGEPKWEPIGLPEGSQVVGRGVRNGNRFYVPTS
SQTIEGLDIVTGKWVSSTRLEQMPGNLVNVNNKLLSLSPTELDCYSIQDLLREEVKQELS
QAAISLESLMKQGELALADGRVEEAMDLLEKAYQMDPEDQDVWLRLRKASTTALMSDFEK
YSSRVSAYKIGLEYDFVFLRTLVQGLQQKGLYDQVLLKLIELSDARTSRRHDQSGGNEFF
QPTPQLSVQEDCWIETQVERALNEIGNWQAKPELVAALDAQVAKIPKLQPNLQRVKLKHF
RSVDRVSSVRVRLAEELLEEGNLLDAEELAIEAFGNDPIANWMKIDAGAAEVLAKVYAAS
FRMDLVEKILPSTANDGMDKVRARVEEWYRVWAERGNEVYPQAIANRFFKAIPTSDWPKG
KVEGNVNASQEMMQLQGFADSTIPCRVQGVVGETLQNWDFTYSTSSGNVILRNRLNGFSS
AARTQSFTLAQGVVQVFAIDGKLILENNRTLVAVDALKRPAIDSENEIWHRYFEGAVPVV
ERGRARQAVEATYWGLPVANKSFRVIGGGRFGLLVIDEDQLMCLDPKTGETIWKQVGFQG
AHFAMDGEVLYGALPTRKLLKMDVRSGQTLKSENFTGAHPYTLAVGKHLLYANEQKRQVT
LVDPKDGTTVLDRTFSADTAIALAPNGLGLVTLDNAGTVFYWNFQTGKEHQHRIEKQDDL
LDLRESFDAKGTTLSVHSFEDKLIVLPYNKIYTYARPEIYPSEGDSAFARVSGSVFAIDA
SDGKPVWEKAVPVMQYGFPLHQAKNNCPGLFFVRRIVLPRVNDGRAAEMVCVAIIDVRNG
NILFEQDDVLGAHQPQFSQTVVPELRMVRCTYGGVEFMFKWTDQEQESSPDRIGQKNMSE
YASKIEEMLKSRKDEKRVPAPRIEAQPVPNP
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atggatgctcgattgcggctcgcatttcttttcggtctgacgacttggattggcggggtt
ctggtttgcaacgtcagcttcgcccaatttgcgcgccccagatcccagcaagttgattcg
acttggatgcccccctcccgagaggtactcactctcttggaggatgctcgcgagcatgtg
gctgcatcgcggtggtcggaagcgacattggcgatcggtcaactgttgggaatcgaatcg
gatgcatccaacgaggaattcggtatcgactatttcctcgaatcggaatcgccaccgagc
caaccccgcgacccccgcttcgggcggattgttcaaggaaacttgttcgcgattctttat
gaattagtcgatcagttacctgacgaagcgatggagatcttagacgttcgacacggcgta
gaagcaaaaaaggtattggatgatgccgttgccactggcgattgggatcgcatcgaacgg
ctttcgactcgactcggttttctcccagtaggtcaagacgccacattgctcatggcgcag
cgagctttggggcaaggagatgcgagccaaggtgcgttcatgctgtcgcagctcctcaag
cagcgtcgtgctatcgctcgcttcggtgcagcccttggtattctcggcgccgaagcgcaa
ttgcttgccgggaaccgtgaagaagcggaacgcctgttgcgattggtcgctgcccagaac
ccctccttccgcgtggattggttcggtacagctttgaattgggacgcggcgacgttggat
aacgacatttcgaagattctcgagaggctctccgccaaagcggcatctcaatcgctgaaa
aaagtggatctcgttgttgctcaaccgtcgatcgtcgggggcaacagccgtcgaaatagc
gatacgcgagcaggcgtcccgcttcctatcctgcaatggcatgccgaactgcatgagtcg
agccaacaaaaggaagaactgttgtcgacgctaaagagccaagccgggatgccaatcgaa
caggccggtacgacgattccctcgaggatgccgatttgcgttgggcgatcgattattgct
tcgacgtttgaccagcggatcgtcgccctggatttgcagaccggtctgctgcagtgggaa
tgcgtttacacgggcatgcccttggggttttccatggagaatatcccgacgcgtggatcc
atcggatcggaatatggggttcccgaataccttgccaaacgggtttggggagaagcgacc
atcggccatttggcgagcgacggagagcgtgtgtatggcgtgagtgaattacccagcgtc
gatgtgtccgaggcctatgcattaggtcccaacgcccgattcgccaggcagctggggatc
aagacctacaacgtgttgcaatgctggagtgtaccggaagagggcaaacttctttgggag
gtgggaggagttaagagcgagacggaacccgcgctggtcaatattctcttcttagggcca
ccattgccctatcgaggggagctgctgattctaggggagctgaacggtgaagtagctttg
ttttcgctcgctcctgattccggaaaagtcctctggcgccagcctcttgtggtgaacaac
ggtgcggtcgttgcgaacgacacgatgcgccgaagtatcggtgcaaccccatctgcggac
ggtaacctgattgtttgcccgactttgtcggggcatttggttgcgttcgatcttcacacc
cgatctctgcaatggggactcgcctatcgctcgaaagtaagcacggcaggagcgatgacg
ggaacctttggcgggatggaactggggatattcgaacccttcgattctcgatcggtcgac
ctggcccctgtgattgccgaaggcgtcgcgctctatgctccgcccgacggattcggtgtc
tatgcggtggagcttcagacgggggaacgcagatggcacgcgttggattctcaagaccga
aaaattcgatatgtcggttgcgtcgccgggcaaacagcgatcattgtttgtcagaatgcg
atttacggactggatttgcaaactggtgagccgaaatgggagcccatcggacttcccgaa
ggatcacaagtggtcggtcgcggggtgcgcaatggcaaccgtttttatgtgcctacttcg
tctcaaaccatcgagggcctcgatattgtcacgggcaagtgggtgtcgagcactcggctc
gagcagatgccaggaaatttggtaaacgtcaacaataaactcctctccctatcacctacc
gaactcgactgctattcgatccaggacttgctccgagaagaggtcaagcaagagctttcg
caggctgcgatttcgttggaatcgttgatgaaacaaggggaattggccttggccgacggg
cgcgtggaggaggcgatggatttgctcgaaaaagcctaccagatggatccggaggaccaa
gacgtttggttgcgacttcgcaaagcttcaacaacggcgttgatgagcgattttgaaaag
tactcgtcgagggtttctgcatacaaaatcggtttggagtatgactttgtctttcttcgc
acgcttgtccaaggcctccagcagaaaggcctgtacgatcaagttctactaaagctgatc
gaactttccgatgcgagaacaagtcgaaggcacgatcaatcgggtgggaacgagttcttt
cagccgactccgcaattgtccgtccaagaagattgttggatcgaaacccaagtcgagcga
gctttgaacgaaatcgggaattggcaagcgaagccagaacttgttgcggcgctcgatgcc
caggtcgcaaagattccaaagcttcaacccaatctgcaacgcgtgaaactcaaacatttt
cggtccgtcgatcgggtctccagcgtgcgtgtgcgattggcggaagaattgctcgaagaa
gggaacttgctcgacgccgaggagcttgccatcgaagcatttggaaacgatccgattgca
aattggatgaagatcgatgccggagctgcagaggtactcgccaaagtctatgcagcatcg
tttcgcatggatctagtagaaaagatccttccctcgacggcgaatgatggaatggataag
gttcgcgcgcgagtcgaagaatggtatcgggtttgggcggaacgcggaaatgaagtatac
ccccaagcaattgcgaaccggtttttcaaagcaattccgaccagcgattggccgaaaggg
aaagtggaggggaatgtcaacgcgtcgcaagagatgatgcagcttcaaggattcgctgac
tctactattccgtgccgagtgcaaggggtggttggagagactctgcagaattgggacttc
acttactccacgagtagcggcaacgtcattttgcgcaaccgtttgaatgggtttagcagc
gctgcgaggacacagtcctttactctggcgcagggagtagttcaagtatttgcaatcgat
ggaaagttgatacttgaaaacaatagaaccctggtcgctgtggatgccttaaagagaccg
gcgatcgatagcgagaatgaaatttggcatcgctatttcgaaggagcagtgccagttgtc
gagcgagggcgggctcgacaagcggtcgaagcgacctactggggattgcctgtcgcgaac
aagtcgtttcgagtgattggaggtggacggtttggattgttggtgatcgatgaagatcaa
ttgatgtgtctagatcccaagacaggcgaaacgatttggaagcaagtcgggtttcaaggg
gcccattttgcaatggacggggaggtgctatacggagctttaccgacccgaaaacttctc
aagatggacgtgcgaagcggtcaaacgctgaagagcgagaatttcacaggagcccatccc
tacacactggcggttggaaaacatcttctttatgcaaacgagcaaaagcggcaagtgaca
ctggtggatccaaaggatggaacaacggtattggatcgaacattctcggccgacacggcc
atcgccttagcgccaaacggacttgggttggtcaccctcgacaatgccggaaccgttttt
tattggaatttccagacaggcaaggagcaccagcaccgaattgaaaaacaggatgatctg
ctcgatttgagagaatctttcgatgcaaaaggtacgacgctgtcggtacattcatttgaa
gataagctaattgtcttgccctacaacaagatctatacctatgcccgacccgagatttat
ccctctgaaggagacagcgcatttgctcgcgtgagtggttccgtgttcgcaatcgatgct
tccgatggaaagccggtttgggagaaagctgtcccagtgatgcaatacggtttcccgttg
catcaagcgaagaataattgtccgggtctgttttttgtccgacgaatcgttctgcctcga
gtgaacgacggtagggctgctgagatggtctgcgtggcaatcatcgatgttaggaatggg
aatatacttttcgaacaggacgacgttctgggagcccatcagcctcagttctcgcagact
gtcgttccggagctcagaatggttcgctgtacatatggtggtgtggagtttatgttcaag
tggacagaccaggaacaagagtcatcaccggatcgcatcggccaaaagaacatgtcggag
tacgcgtccaagatcgaggaaatgctcaagtcgcgaaaagatgagaagcgcgttcctgca
cctaggatcgaagcacagcccgtccctaatccttaa
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integrated database retrieval system
