Pirellula sp. SH-Sr6A: VN12_05055
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Entry
VN12_05055 CDS
T04360
Symbol
recQ_2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN12_05055 (recQ_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pir03019
]
VN12_05055 (recQ_2)
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_05055 (recQ_2)
Enzymes [BR:
pir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VN12_05055 (recQ_2)
Messenger RNA biogenesis [BR:
pir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VN12_05055 (recQ_2)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VN12_05055 (recQ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RQC
HTH_40
Init_tRNA_PT
SKI
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMV31465
UniProt:
A0A142XX31
LinkDB
All DBs
Position
complement(1253594..1256428)
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AA seq
944 aa
AA seq
DB search
MSNTVNLDLQEALHQFGMAEFRRGQREVIDHVIAGNDCLCVMPTGGGKSLCYQLPSLVRT
GLTIVVSPLIALMKDQVDGLTKRGITATLINSTLSPSEQAYRLERVAGGHYRLLYVAPER
LRNPTFLDAIRSTPVQLLAIDEAHCISEWGHDFRPDYQRVGKFREFLGGVQTIALTATAT
PRVRQDIVASLKLKVAKHFVTGFARDNLFLGVVTVHSDREKDKKLLEFLETSPGSGIIYA
ATRKRCESLVELLAKERKMSVGAYHAGLAPEQRKLVQDQFMRGELEAIVATNAFGMGIDK
SDLRYVVHYNMPGTLEAYYQEAGRAGRDGHSSQCVLLYSAQDRYIQEFFIENANPSREVL
QSVYEFLLQREEDPIELTAEQIKELMNAPTTSEAVNSALQILARTDVLERLEVAGGLAMV
RIQSQLPTLVDLLPRDATVKRSVLRAIEKAVGDRRDEAVYINPRWLMNQLQMERDTLSRH
LRDLCSLPGFEYVPPFRGRAIHFRKRDVPFDQLRIDHASLDARKKSDYEKLDQMVAFAQC
RSCRQKAILQYFGDMSAANCNICDRCQGKAGWPKIPVDRLAPKPVKPSEPVKHLDIAAAT
TNGISSKETAASLGPADRGDGGVDKKVPKPRAEKVSKKAKVSAGEVVPSPTEQEDARELL
RKLVGAIERTHGYLSKTILAQFFSGIDNRAIQGLRLQRLPEFGLLANWKKSHVSSFLDLL
LDKSVLLLTELRAGKVTVSVSPSGLEMLHGIGVWPDEIVHPCARYQSQSAVSLAKPMPAE
IDATEIDAADLAENGCANESIQDVMPLHPSDSVDSIVTKPVEVVSPQVPAGSDKVALPDC
ELRDALQVRDPMIGTFQDWQWSVRLAKHGYRLGEIALIRGKQPDQILGDLCDALDVGERI
PIEQLFDKRTQIAIREVDGRAVVPPLAFASFPRLWEFAKRWKTE
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaccgtcaacttggacctgcaagaggcattgcaccagttcggcatggcggaa
ttccggcgaggccagcgcgaggtcatcgaccacgtcatcgctggtaacgattgcttgtgt
gttatgccgacgggtggtggcaaaagtctctgctaccagttacccagccttgtccgcacc
gggttgaccattgtcgtctcccccctcattgccttgatgaaagatcaagtcgacgggctg
accaaacggggcatcacggcgaccctgatcaatagcacgctgagcccctcggagcaagcc
taccgattggagagggttgccggtgggcattatcggcttctttatgtagcgccggagcgg
cttcgcaatcctacctttcttgacgcaatccggtcgactccggtgcagctgcttgctatt
gacgaagcccattgcatcagcgagtgggggcacgactttcgccccgattaccagcgtgtg
ggcaagtttcgtgagtttctcggcggggtccagacaattgcattgacggccactgcgacg
ccgagagttcgtcaagatatcgtagcctcgctcaagctaaaggtcgcgaagcatttcgtc
acgggttttgcacgcgacaatctatttcttggagtggtgaccgtccacagcgaccgggag
aaagacaaaaagcttctggagttcctcgagacgagtccgggcagtgggattatctatgcc
gcgacgcgcaagcgatgcgagtcgctcgtggagttgttagccaaagagcgaaagatgagc
gtgggggcgtaccatgccggattggcgcccgagcagcgaaaattggtgcaagatcagttc
atgcgaggagagttggaggctattgtcgccacgaacgcctttgggatggggatcgacaaa
tcggacttgcgatatgtcgtccactacaacatgcccgggacattggaggcttactatcaa
gaagcagggcgggcgggccgagatggccactcctcgcaatgcgtccttctctatagcgcc
caagaccgatacatccaagaattctttattgagaatgccaatccttcccgcgaggtgctt
cagtcggtgtacgagttcttgctccagcgcgaggaggatccgatcgaactgacggcggag
cagatcaaggagttgatgaatgcgccgacgacttcggaagcggtgaattccgcgttgcag
atcttggcgaggaccgatgtgctggagcgattggaggtcgcaggtggattggcgatggtt
cgtatccaaagccagttaccgaccttggtcgaccttttgcctcgagatgcgacggtgaaa
cggagtgttctccgcgcgatcgaaaaggcggtcggcgatcgacgcgatgaagcggtgtac
atcaatcctcgctggctgatgaatcagttgcagatggaacgggatactctttccaggcat
ctgcgagatctctgttctctgccgggattcgagtatgttcctccgtttcgagggcgagcg
attcactttcgaaagagagatgttccgttcgatcaattgcgcatcgatcacgcttccctc
gatgcacgcaagaaatcggattacgagaaactcgatcaaatggtcgcctttgcccaatgc
cgcagctgtcggcagaaggcgattcttcagtactttggagatatgtctgccgcgaattgc
aatatctgcgatcgctgtcaaggcaaagcggggtggccgaagatccctgtggatcgactg
gccccaaagccggtcaagccaagcgagccggtcaaacacttggacatcgcagcggctacg
acaaatggcatttcatcgaaggagacagcggctagcctgggtcctgccgatcggggggat
ggtggcgtcgataaaaaggtacccaagccacgagcggagaaggtaagcaagaaagcgaag
gtctcggcaggggaagtcgtgccgtcgcccacagaacaagaagatgcgcgggagttgttg
cgcaagctagttggtgcgatcgaacgaacccatgggtatctgagtaaaaccatcctcgct
cagtttttctccggtattgataatcgtgccatccaaggccttcggttgcagcgactaccc
gagtttgggttgttggcgaattggaagaagagccatgtatcgagctttttggatctgctt
ttggacaagtcggtattgctgttgaccgagttgagggcgggtaaggtgacggtgtcggtg
agcccatctggattggaaatgcttcatggtatcggggtttggccagacgaaatcgtccat
ccctgcgctcgatatcaatctcaatctgccgtgtcgctggcgaaaccgatgcccgcagaa
atcgatgcgacagaaatcgatgcggcggatctagcggaaaatggttgtgcaaacgaatcg
attcaggacgtcatgccgttgcacccatccgattcggtggattcgatagtgaccaagccc
gtggaagtcgtatcgccacaagttccagctggttcggacaaggtggcgttgccggactgc
gaacttcgggatgcgctccaggtgcgagatccgatgattggaacgttccaagattggcag
tggtcggtgcgcttggccaaacatggatatcgattgggggagatcgcgcttatacgcggc
aagcagccggatcagatcttgggagatttatgcgatgctctcgatgtgggagagcgaatc
cccatcgagcagttgtttgataagcgtactcagatcgcgattcgagaagtcgatgggcgc
gccgtcgttccaccccttgccttcgcctcctttcccaggctctgggagtttgccaagcgc
tggaagactgagtaa
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