Pirellula sp. SH-Sr6A: VN12_07635
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Entry
VN12_07635 CDS
T04360
Name
(GenBank) L,D-transpeptidase catalytic domain
Organism
pir
Pirellula sp. SH-Sr6A
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Gene cluster
GFIT
Motif
Pfam:
YkuD
LysM
Sp-DndD
Motif
Other DBs
NCBI-ProteinID:
AMV31977
UniProt:
A0A142XYD1
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Position
1827568..1829097
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AA seq
509 aa
AA seq
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MDFVANAKALERRGHDWGSPHAGYALVWDAVFTSCEASAVRFVRHAFFEEVRRTEVQTLK
TAVVVVLLLFVIYGGFIALNGSNNTSFNPEIEGLDLSADAPDITGVTGPVAPAPAALPPG
TPAAAPQSDPWAAFQSAPSSGFSSAATPPTSPLPGLPVSSSPSPLSPLPASPSDVALPSL
PGAPASDLAKPADSLQTLPPLPSTLPGAAGNDDGKSEPTKEDLKTTNSPDFGIALPPSAT
GLPKPDSSESPKDESTGPDENSVDPTDAKQTGDSKPIGPSKSYENAKETALSQSKRGQLK
EALATLSLFYNDNELTTEQRQDLLDFLDALAGEVVYSRQHFLDIAYFPVPGETLEDVAKK
FEVPAEILARINAIEPKGPLQTGTKLKVVPGPFRAEVDLSTSELTLFVGDLYAGRYPVTI
GKDPAPKTGDYKVVDKQKDRNYYGSGAPIPGSDPRNPYGGFWMDLGGDLCIHGSSPDASG
PQGCISLSPQDAADVFGMLSHGSPIVIRN
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
gtggatttcgttgctaacgcgaaggcgttggaacgtcgcggacacgactggggttctccc
cacgccggatacgcactcgtttgggatgcggtgttcacaagctgtgaggcgagcgcggta
cgcttcgttcgccatgccttcttcgaagaggtcaggaggaccgaagtgcaaacactcaaa
actgctgttgtcgtcgtattgcttttgttcgtgatctatgggggatttatcgctctcaac
ggatccaacaacacctccttcaatccggagatcgaagggctcgatctgtcggcggatgcc
ccggacataacgggcgtaactgggcctgttgcgcctgccccggctgccctgcccccgggt
actccggcagctgcgccccaatcggatccctgggcggcgttccaaagcgccccatcgtcc
ggtttcagcagcgctgcaactcctcccaccagcccactccctggccttccagtgagttct
tctccgtcgcctctctcgcctctgccggcgtccccctccgacgtcgcacttccgagtctg
ccaggtgctcctgcgagcgatctcgctaagccagccgattccctgcaaacgctgcctccg
ctcccctccacacttcctggggccgcaggcaacgacgatggaaaatcagaaccaactaaa
gaggatctgaaaacaaccaatagtcctgatttcggaattgccctcccgccatcggcaacg
ggcctccccaaaccggattcgtccgaatctcctaaggacgagtcgacgggaccagacgaa
aacagtgtcgatccaaccgacgcgaaacagacgggcgatagcaagccgatcggtcccagc
aaatcgtatgaaaacgccaaggaaacagctctctcgcaatccaaacgcggccagctgaag
gaagctctcgcgacgctcagcctcttttacaacgacaacgagctgacaaccgaacaacgg
caagacctgttggattttctcgatgcgttggcgggagaagtcgtttactcccggcagcac
ttcctggacatcgcttactttcctgtccccggcgagacactcgaagacgttgccaagaag
tttgaagtcccggccgaaatccttgcccgtatcaacgcgatcgaaccaaagggcccttta
caaaccggtaccaaactcaaagtggtgccaggcccctttcgtgctgaagtcgacttgagc
acgagcgaactgacgttgttcgttggcgatttgtatgcgggccgttacccggtcacgatt
ggaaaagatcccgcccccaagacgggcgactacaaagtggtcgataagcaaaaggatcgt
aactattatggcagcggagcccctatccccggctccgacccacgcaatccttatggtggc
ttctggatggatctcggaggagatctctgcatccatggttcgtcgcccgatgcgagcggc
ccccaaggctgcatcagcttgtctccccaagatgcggccgacgtcttcggcatgctctcg
catggctcccctattgtcattcgcaattag
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