Pirellula sp. SH-Sr6A: VN12_08370
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Entry
VN12_08370 CDS
T04360
Symbol
frdA
Name
(GenBank) Fumarate reductase flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir00020
Citrate cycle (TCA cycle)
pir00190
Oxidative phosphorylation
pir00650
Butanoate metabolism
pir00720
Other carbon fixation pathways
pir01100
Metabolic pathways
pir01110
Biosynthesis of secondary metabolites
pir01120
Microbial metabolism in diverse environments
pir01200
Carbon metabolism
Module
pir_M00009
Citrate cycle (TCA cycle, Krebs cycle)
pir_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
VN12_08370 (frdA)
00650 Butanoate metabolism
VN12_08370 (frdA)
09102 Energy metabolism
00190 Oxidative phosphorylation
VN12_08370 (frdA)
00720 Other carbon fixation pathways
VN12_08370 (frdA)
Enzymes [BR:
pir01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
VN12_08370 (frdA)
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
GIDA
Pyr_redox_2
HI0933_like
FAD_binding_3
NAD_binding_8
DAO
AlaDh_PNT_C
FAD_oxidored
Motif
Other DBs
NCBI-ProteinID:
AMV32123
LinkDB
All DBs
Position
1998457..2000436
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AA seq
659 aa
AA seq
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MGNRVLVVGGGLAGLAATMKLAELGVPVDLLSLTPVKRSHSVCAQGGINSVNDLTRQQGD
DEWKHFDDTIYGGDFLQNQPPVKEMAYWAPKVIDLMDRLGVTFNRTPEGFIDRRRFGGTL
YKRTAFAGATTGQQLLYALDEQVRRYEAEGMVKKYEFWDFLGPVTDESGRCVGAVAQDMV
SMEIRSFPADAVIVATGGNGLVFGRSTMSVFCTGSAASRCFQAGAKLGNPEFIQVHPTAI
PGADKLRLMSESARGEGGRVWVPRKPNDSRYPKEIPQSDRYYFLEERFPKYGNLVPRDIA
TREIFNICVNEGLSVDPTRMCVYLDLTHIPRAELDRKLGGILEIYEKFQGVDPRDEPMKI
FPAVHYSMGGLWVDYEANASGGLLAGSPKNQVTNIPGLYAMGECDYQYHGANRLGANSLL
SCIFSGLFVAPGIVNWMKDHKAASDLPKSLFEHAVASANDRHKKLLANQAGDENPYLLHQ
ELGDAMTRAATVVRDNKQLEDAYSKVLEMQERSKRCSLSDTGNWTNQNVIFTKAVQDMFP
VALSILKGALMRDESRGAHFKPAFSLPSLKATDPAERRKEAEEWCDNFEANNRKFLKTTV
CTWNGTEPDHSFEDIDTRLLAPRPRLYGLVGAEEIEQVWKERTAKKEASQKKELVGAAT
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcgagtattggtagtcggtggtggcttggcgggactcgcagccacaatgaaa
ctcgcggagcttggtgttccggtagacctcttgagcttgaccccggtgaaacgatctcac
agcgtgtgcgcccagggcggaatcaacagtgtcaacgatttgactcgccaacagggggac
gacgagtggaaacacttcgacgacacgatctacggtggcgacttcctccaaaaccagccg
cccgtgaaagagatggcgtactgggctcccaaagtcatcgatttgatggaccgcctcggc
gtcaccttcaatagaactcccgaaggtttcatcgaccgacgacgctttggtggaacgctt
tataaacgaaccgcgttcgcaggcgcgacgaccggacaacagctcctttacgctctcgat
gagcaagttcgccgctacgaagcggagggaatggttaagaagtatgagttttgggatttc
ctcggacctgtaacggacgagagcgggcgctgtgtcggcgctgtcgcacaggacatggtg
tcgatggagattcgctcgttccccgccgatgcggttatcgttgcgaccggcggcaatggc
ttggtcttcggccgttcgaccatgtccgttttctgcaccggcagcgcggcgagtcgatgc
ttccaagcgggcgctaaactcgggaatcccgagttcattcaagtccacccgaccgcgatt
ccgggagccgataagcttcgattgatgagcgaatcggcacggggtgaagggggacgcgtt
tgggtacctcgcaagccaaacgactcccgctatccgaaagagatcccgcaatcggatcgt
tattactttctcgaagagcggtttcccaagtacgggaatctcgttcctcgcgatatcgca
acgcgcgagattttcaacatctgtgtgaacgaaggtctctccgtcgaccccacgcgtatg
tgcgtgtacttggacctcacccacatcccccgggcggagctggaccgcaagctaggcggt
atccttgagatctacgaaaaattccaaggggtcgaccctcgcgacgagccgatgaaaatc
ttcccagcggtccactacagcatgggcggtctctgggtcgactacgaagcgaacgcctcc
ggaggattgctcgccggttcaccaaagaatcaagtcaccaatataccgggactctatgcg
atgggtgaatgcgattaccaataccacggagcgaatcgcttgggcgcgaactcgctattg
agctgcatcttcagcggtcttttcgttgcacctgggatcgtcaactggatgaaggaccat
aaggcggcgagcgatcttcctaagagcttgttcgaacatgcggtcgcgtcggcgaatgat
cgtcacaagaaactccttgcgaaccaagctggagacgaaaacccttacttgctccaccaa
gagttgggcgatgcgatgacccgggccgcgacggtcgttcgagacaataagcaacttgaa
gacgcctactccaaagtgcttgagatgcaggaacgttcgaagcgttgctccttgagtgac
acaggaaactggacgaaccaaaacgtgatcttcacgaaagccgtgcaggatatgttccct
gtcgctctgagcatcctcaaaggtgcgttgatgcgagatgaaagccggggtgcccacttc
aagcccgcgttctctctccctagcctcaaggcgaccgatcctgcagagcgacgcaaagaa
gcggaagaatggtgcgataacttcgaagccaacaaccgaaaattcctcaaaacaaccgtc
tgcacttggaacggtaccgaacccgaccattctttcgaagatatcgatacccgcctcctc
gctccgcgaccaagactgtacggattggtcggggcagaagagatcgagcaagtctggaag
gaacggacggccaaaaaagaagcgagtcaaaagaaggaactggtcggcgcggcgacctaa
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