Pirellula sp. SH-Sr6A: VN12_10410
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Entry
VN12_10410 CDS
T04360
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VN12_10410 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pir03021
]
VN12_10410 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_10410 (rpoA_1)
Enzymes [BR:
pir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VN12_10410 (rpoA_1)
Transcription machinery [BR:
pir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VN12_10410 (rpoA_1)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VN12_10410 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
AMIN-like
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AMV32527
UniProt:
A0A142XZV0
LinkDB
All DBs
Position
2519366..2520349
Genome browser
AA seq
327 aa
AA seq
DB search
MHVRWRGLELPSQVNVDRSTLTSTFGRFVAEPFERGFGATIGNSLRRVLLSSLEGSAVTQ
IKIRGAQHEFSSIPGVLEDVTEIVLNVKALVVKNHSDNTRVLTVSADKAGVITGADVQTD
SDVEIINKDHVLATLTADVPFMMEMVVENGRGYVPASEHSSGDHEIGIIPVDAVYSPVVR
VRYFVEETRVGQKTNYDRLIIELWTDGSVPPEMALVEGAKILRKHLNPFVQSSELGKQVH
AVARGGPGSAEAQLEAKLNTLIADLKLSVRANNCLEAEGIRLVRDLVQRTEDQLLEVRNF
GETTLNEVRERLSGMGLHLGMRVPSMR
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttcgttggcgtggattagagctgcccagccaagttaatgtagaccgatcgaca
ttgacctcgacgtttggccggttcgttgcagaaccgttcgaacgaggtttcggcgccacc
attggtaacagccttcgtcgagttctcttgtcgagcctggaaggaagcgcggtaacccag
atcaagattcgcggcgctcagcacgaattctcgtcgatccccggcgtcctcgaggacgtg
acggaaatcgtcttgaacgtgaaggcgttggtggtcaagaaccacagcgacaacacgcgt
gttctcaccgtaagtgccgacaaggcaggtgtgatcaccggtgcggacgttcaaaccgat
tccgatgtcgagatcatcaacaaggatcacgtcctagcgactttgaccgccgacgttcca
ttcatgatggaaatggttgtcgaaaacggtcgtgggtacgtccctgcctccgagcatagc
tcaggcgatcacgaaatcggaattatcccggtcgatgcggtttacagccccgttgtccgc
gtccgatatttcgtggaagaaacacgcgttggacaaaagaccaactacgaccgactgatt
atcgagctctggaccgacggatccgtcccacccgagatggcattggtcgagggtgccaag
attcttcgcaagcacctcaacccgtttgtgcaatcgagcgagcttggcaagcaagttcat
gcggttgctcgcggcggtcctggctccgcagaggctcagttggaagcgaagctcaacacg
ctcatcgcggacttgaagctctcggttcgggccaacaattgcttggaagctgaagggatc
cgtctcgttcgagacttggtccaacgcaccgaagatcagctgcttgaagttagaaacttt
ggagagaccacgctcaatgaagtgcgcgagcgactgagcggtatgggtctccaccttggc
atgcgagtcccatcgatgcggtaa
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