Pirellula sp. SH-Sr6A: VN12_10450
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Entry
VN12_10450 CDS
T04360
Symbol
lcfB_1
Name
(GenBank) Long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir00061
Fatty acid biosynthesis
pir00071
Fatty acid degradation
pir01100
Metabolic pathways
pir01212
Fatty acid metabolism
pir02024
Quorum sensing
pir04146
Peroxisome
Module
pir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
VN12_10450 (lcfB_1)
00071 Fatty acid degradation
VN12_10450 (lcfB_1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
VN12_10450 (lcfB_1)
09145 Cellular community - prokaryotes
02024 Quorum sensing
VN12_10450 (lcfB_1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pir01004
]
VN12_10450 (lcfB_1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pir04147
]
VN12_10450 (lcfB_1)
Enzymes [BR:
pir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
VN12_10450 (lcfB_1)
Lipid biosynthesis proteins [BR:
pir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
VN12_10450 (lcfB_1)
Exosome [BR:
pir04147
]
Exosomal proteins
Exosomal proteins of breast milk
VN12_10450 (lcfB_1)
Exosomal proteins of breast cancer cells
VN12_10450 (lcfB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Polyoma_coat2
Motif
Other DBs
NCBI-ProteinID:
AMV32535
UniProt:
A0A142Y056
LinkDB
All DBs
Position
2528010..2529596
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AA seq
528 aa
AA seq
DB search
MAPGAFELRNGVQRGGDPPPSALIYLAKHARSKPDSVAWIERSADLHKPPLQISWSQLTG
LVQSFAHELSRTGIRRQDRVVLWGFNSLDWILTDWACNALGATSIPLDPRLPDQTVRDIV
DRVSPRATFLDPLHRERVAGLPLPNWRSLPTGGDPSWLDSRLKDATIGDASQPATILFTS
GTSNTPKGVMLSHGNLISNALAKLKAMPQFPTDHRVNLLPFAHAYARTCELTTWLISGSS
MEVARGLDDFFSRLPFARPTLINAVPSVYEALLARHPASTEANLRAALGGRIRQLASGGA
PLHYALRTCFQDAGMPIYQGYGLTETSPVVCSNIHPDSGAPTCLDGVGPPVEGTEVMLDT
DSNLWVRGLNVMMGYWDDPEETNRRWRRFDGPHEGDWFHTGDLARRIEGTPSLEILGRCD
DTIVLANGYKLHPLAIEAQLSKIPYLENSVVIPASNGTWRICVSGRKESIGSDQLVDLEK
QVLVRCSQEFRNLFSKIVICPEPWTVESGLLNFKGAKRRNEFAARFGR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggctccaggcgcatttgaactaagaaacggcgtccagcgaggtggagatccccccccc
tcggcgttgatctatcttgcaaagcatgctcggtccaagcccgattcggtcgcttggatc
gagcgatctgcggaccttcataagccacccctgcagatatcttggagccagctcacagga
ctagttcaaagctttgctcatgagctgtcgcgtacgggaattcgtcgccaggatcgcgtt
gtcctttggggattcaattcattggattggatcctcacggattgggcctgcaatgctctc
ggcgcgacttcgattccgttggatccccgtctcccagatcaaaccgttcgcgacattgtc
gatcgagtttcacctcgagccacgtttctagatcccctgcatcgggaacgcgtagctggc
ctccccctccctaactggaggtcgctacctaccggcggcgatccaagttggctcgattcg
aggcttaaggatgcaaccattggggacgcatcacagccggcgaccatactgtttacgtca
gggacatccaacacccccaaaggggtgatgctttcgcatggaaacttgatctccaatgct
ttggccaagctcaaagcgatgcctcagttcccaaccgaccatcgagtcaatctccttcca
ttcgcgcacgcttatgcccgtacttgcgaactgaccacctggttgatcagcggttcctcc
atggaggtcgcgcgcgggctcgatgacttcttttccaggcttcccttcgcacgaccgact
ttgatcaacgcggttccttctgtctacgaggccttgctcgcgcgacacccagcgtccact
gaggcgaatcttcgggcggctctaggtggtcggatccgacagctggccagcggtggagcc
ccattgcactacgccctacgaacctgcttccaggacgcgggaatgcccatctatcaaggg
tacgggctcacggaaacgagccccgtcgtctgctcgaatatccatccggactccggcgca
cccacttgtttagatggtgtcggtccaccggttgagggaacggaagtgatgctcgacacg
gactcgaatctctgggtgcgagggctcaacgtcatgatgggctactgggacgatcctgag
gagacgaatcgacgctggagaagattcgacggtccgcacgaaggggattggtttcacaca
ggcgacttggcaagacgcatcgaagggaccccatcgctcgagattctaggtcgatgcgac
gatacgatcgtgctggcaaatggctacaaacttcatccgcttgcgatcgaggctcagttg
agcaagattccgtatttggaaaattccgtcgtgattcccgcgtccaacggcacttggcga
atctgcgtttcgggcaggaaggaatcgatcggttcggaccaattagtggacttggaaaag
caagttctcgttcggtgcagtcaggagtttagaaatctgttttccaagatcgtgatttgc
cccgaaccatggaccgtcgaatccggattgctcaacttcaagggagcgaagcgccggaat
gagtttgccgcacgatttggtcgttag
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