KEGG   Pirellula sp. SH-Sr6A: VN12_11300
Entry
VN12_11300        CDS       T04360                                 
Symbol
pcrA_1
Name
(GenBank) ATP-dependent DNA helicase PcrA
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
pir  Pirellula sp. SH-Sr6A
Pathway
pir03420  Nucleotide excision repair
pir03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VN12_11300 (pcrA_1)
   03430 Mismatch repair
    VN12_11300 (pcrA_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pir03400]
    VN12_11300 (pcrA_1)
Enzymes [BR:pir01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VN12_11300 (pcrA_1)
DNA repair and recombination proteins [BR:pir03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VN12_11300 (pcrA_1)
   MMR (mismatch excision repair)
    Other MMR factors
     VN12_11300 (pcrA_1)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_11 PcrA_UvrD_tudor
Other DBs
NCBI-ProteinID: AMV32701
UniProt: A0A142Y0L4
LinkDB
Position
complement(2733545..2735983)
AA seq 812 aa
MALTTSQIIDSLNEPQRQAVTHIEGPLLTLAGPGSGKTRVVTHRIAYMLDQGVSPYSILA
LTFTNKAAREMKARLDRMVDDCPVWMGTFHGYCARFLRRFGEMVGIAPNFTIFDTDDSKN
ALKKAIEQANVSLTHLNQGDIGRRIGALKNKAISPEIFEGTVRGDHDRIISKVYPIYQKL
LRQFNAVDFDDLLMHTANILRSNPDLRSDLDAKHRYILVDEYQDTNLAQYLIVRGLSIDH
PNLNVTGDPDQSIYSWRGADISNILSFEKDYPQSSTVRLEHNYRSTPQILSVADSLISCN
TRRKAKVLKPTCESGASVRFCTYRSDREEADDIARHIAMEILENGAKAKDFAVLYRTNAQ
SRLMEQALLRCKLNYQLIGGFRFYHREEIKDILAYLRLVHNPTDDVAFDRVVNVPTRGLG
DKSLEKVRDLARQREIPMLVALRATIERGVLSKKAASGADKFLKTYDKMVHLSSGPLVAV
IDCMLQETDYIQYLTARKSETPDESIIGNINELRADAAQADSESEDGNTMERFLEQVTLI
ADADGLEDSDNKVTLMTLHAAKGLEFENVFVIAVEHGILPHIRAMDDPSQLEEERRLLFV
GITRAKRWLQLSMAKQRGFSNARVGSASQFAMELPRAELEMIDRTDVDAFNISFMDEIDQ
RSEEDPWIDEFEPSEKPTKKPSKPMGKKTVLLSCDEWNQDDGGSEFVPDAAPMEEPSPEP
SETGNAVLQKLRGKLGLPNLKSGSHFQTITTKEGVEVGLFEQGSIVRHPEYGIGQVASVD
GHGARRMARVSFENGELRSFQLSKSPLQLIEP
NT seq 2439 nt   +upstreamnt  +downstreamnt
atggccctcacgacctcccaaatcatcgactcgctgaacgaaccgcaacggcaggcggtg
acgcacatcgaaggaccgcttttgaccctggccggccccgggagcggcaaaacacgcgtc
gtcacgcatcgcattgcatacatgctcgatcaaggtgtctcgccctactcaatcctcgca
ttgaccttcaccaacaaagcggcgcgcgagatgaaagcgcgcctcgaccgtatggtcgat
gattgcccggtctggatgggaacattccacggctactgcgcgcgatttctacggcgcttt
ggcgaaatggttggcatcgcgccgaactttaccatcttcgacaccgacgactcaaaaaat
gctctcaagaaagcgatcgaacaagcgaacgtgtctctcacgcacttgaaccaaggggac
atcgggcgacgcatcggcgcattgaaaaacaaagcgatctcccctgagatcttcgaagga
accgtgcgcggagaccacgatcgtatcatcagtaaagtctaccccatctaccaaaaactc
cttcgccaattcaacgccgtcgacttcgacgatttgttgatgcacacggccaacatcctt
cgctccaaccccgacctccgatcggacttggacgcaaaacatcgctacatcctggtggat
gaataccaagacaccaaccttgctcagtacttgatcgttcgcggtctctcgatcgatcac
ccgaatctgaatgtcaccggtgatccagaccaatcgatttacagttggcgcggagcggat
atctcgaacatcttgagcttcgagaaggattatcctcagtcgagtaccgtccgattggaa
cacaactaccgcagcaccccccaaatcctctctgtcgcagatagcttgatctcatgcaac
acgcggcgcaaagcgaaagtgctgaagccgacttgcgaatcgggtgcatcggttcgtttt
tgtacctatcgcagcgatcgcgaggaggcggacgatatcgcgcggcatattgcgatggaa
attttggagaacggcgcaaaagccaaagacttcgcggtcctctaccgaaccaacgcgcag
tcgcggctcatggagcaagcactcttgcgatgcaaattgaattaccaactcattggtggc
ttccgtttctaccatcgtgaagaaatcaaagacatactcgcctatctacgcttggtccat
aatccgaccgacgatgttgcgttcgatcgggttgtcaatgtcccgacgcgcgggcttggg
gataagtcgctcgagaaagtgcgagatctcgctcgtcaacgggagatccccatgttggtc
gccttgcgcgcgaccattgaacggggggtactcagcaagaaggccgcatcgggagcggat
aaattcctgaagacttatgacaaaatggtgcacctgtcgtcggggccgctggtcgcggtg
atcgactgcatgctccaggaaacggactacattcaatacctcacggctcgcaaatccgag
acccccgacgagagtatcatcggtaacatcaatgaactccgggcggatgccgcacaagcg
gatagcgaatcggaggatggcaatacgatggaacgatttctagaacaagtcacgttgatc
gccgatgcggatggtctcgaggactcggacaacaaagtcaccttgatgaccctccatgcg
gcaaaggggctagagtttgaaaatgtcttcgtcatcgcggtcgaacatgggatcctgcct
cacatccgcgccatggatgatccctctcaattagaagaagagcgacggttgcttttcgtc
ggaatcacacgggccaaacgttggttgcagctcagcatggccaaacagcggggattcagc
aacgcgcgcgtcgggtccgctagccagtttgccatggagttgcctcgagcggaactcgaa
atgatcgatcgcaccgatgtcgacgccttcaatatttccttcatggacgagatcgatcaa
cgctccgaagaagacccttggatcgatgaattcgagccctctgaaaaaccaacaaagaaa
ccgtcgaagccgatggggaagaaaacagtgctcctctcttgcgatgagtggaatcaagac
gatggtggaagcgaatttgtcccagatgccgctcccatggaagaacccagtccggaaccg
tccgaaacaggaaacgccgtgttgcaaaagctgcggggaaaactggggctaccaaactta
aaatccggctcccattttcaaaccattacgaccaaagaaggggtcgaagtggggttgttc
gaacaaggctctatcgttcgacatccggaatatggaatcgggcaagtcgcgtcggtagat
ggccatggcgcccgtcgcatggctcgcgtctcgtttgaaaacggggaactgcgaagcttc
caactcagcaagtctccgctgcagctcattgaaccctag

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