Pirellula sp. SH-Sr6A: VN12_12070
Help
Entry
VN12_12070 CDS
T04360
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pir
Pirellula sp. SH-Sr6A
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pir03016
]
VN12_12070 (rnd)
Enzymes [BR:
pir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VN12_12070 (rnd)
Transfer RNA biogenesis [BR:
pir03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VN12_12070 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF2357
Motif
Other DBs
NCBI-ProteinID:
AMV32854
LinkDB
All DBs
Position
complement(2947244..2948434)
Genome browser
AA seq
396 aa
AA seq
DB search
MNARFQYITNQDSLHQLCRQIDEDKVVAFDTEFVAEDSYRPELCLLQVAVPDGIYVIDPY
TLDSLDPFWNQLTSSETQVVVHAGREETLFCYRATQKLIPNLFDIQLAAAFLGHEYPASY
ANLVHRYTGVNLDKEETRSDWRKRPLSNQQLQYAAQDVKDLLRLHRSMEKELGKLDRVHW
VREETSRWQEDLEQFESSENWFRISGIQALSGNSLSIVRALWMWREQRAKERDLPARKVL
RDDLLIELARRGNGDERRMASLRGMEHRHVKQLIPELAKVIADALDHPIPSWPRKARYGK
GQPPAMLTQFLSAALAYICRTKRISPSVVATADDLRDFVKYRLDGSDPDIPPPSLVTGWR
AEIIGRELDDLLSGRLAMVLDNPDSDMPIRFHRIAP
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgcgcgatttcagtatatcacaaaccaagattctcttcatcagctttgccgtcag
atcgatgaggacaaagtcgtcgcattcgataccgagttcgtcgcagaggattcctatcgc
cccgaactctgtttacttcaagttgcagtgccggacggcatctatgtgatcgacccctat
actctcgatagcttggacccgttctggaatcagctgacttcatccgaaacgcaagtcgtt
gttcatgcgggtcgtgaggaaacgctcttctgctatcgggccacgcaaaaactgattccc
aatctattcgatattcaactggctgccgccttcttagggcacgagtatcctgcctcctat
gcgaacttggtgcatcgctacacaggagtcaatctggacaaggaagaaacgagatcggac
tggcggaagcgacctctctccaatcaacagcttcagtacgcagctcaagacgtcaaagat
ttgcttcgactccatcgatcgatggaaaaggaactgggcaagctcgatcgggtccattgg
gtccgtgaagaaacgagccgttggcaagaagatttggagcaattcgaatcgagcgagaat
tggtttcggatcagcggcatccaagccttgagcggcaatagcttgtccatcgtgcgggct
ctctggatgtggcgcgagcaacgagccaaagaacgcgacctacccgcccggaaggttctc
cgtgatgatctgctcatcgaactggcgcgacgaggcaacggggacgaacgccgtatggcc
agccttcggggcatggagcatcgccacgtcaaacaattgattcccgaactggccaaggtg
attgcggatgccttggaccaccctattccgagctggccgcgcaaggcgcgttacggtaag
gggcaaccacccgccatgctcactcaatttctttctgcggcgctggcttatatctgccgc
acgaaacgcatttctccttcggtcgttgcgaccgccgatgatctgcgtgacttcgttaaa
tatcgcctagatgggtccgaccctgacattcctccacccagcctcgtcacgggttggcga
gccgagatcattggccgagagctggatgatctactcagcgggcgactggcgatggtgctc
gataatcccgatagcgacatgccgatccgattccatcgaatcgccccctag
DBGET
integrated database retrieval system
