Pirellula sp. SH-Sr6A: VN12_12465
Help
Entry
VN12_12465 CDS
T04360
Name
(GenBank) Putative peptidyl-prolyl cis-trans isomerase
KO
K20276
large repetitive protein
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VN12_12465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_5
Pro_isomerase
Cadherin_4
He_PIG
Thioredoxin
Motif
Other DBs
NCBI-ProteinID:
AMV32933
UniProt:
A0A142Y140
LinkDB
All DBs
Position
complement(3049262..3053983)
Genome browser
AA seq
1573 aa
AA seq
DB search
MAPVERSPLQDHSLSEARNWFRALLRRVLDDGSTRTTRPIHFEPLETRQLMASDFYSSAA
GYSNGLDSSAFGDSAYYTSGVMDSSSLVGEGEDAPNLVEFAKALQQAGVRFFGADWCPLC
TEQKNLFQDGKNYLPFIEMTNPDRTRNATAISENVTEYPTWEFANGTRVTGVQTLAQLSA
LSGVAIPSGSDPTIVEIPNQTVLNGSPLHVPIDAYDPNGGPLTITVQSSNPSVIAAEMVT
NQKSLRLNINGYGEMVFRLFADEAPRPVSRIEQLVNSGFYNQSGSNKIIFHRVIDNFVLQ
AGDPTGTGSGGSTLADFDDQFDFDLQHNRTGILSYAKSADDTNDSQFFITEGAQRHLDFN
HSIFGQLVEGDAVREGISRTQVSNSRPVNEISINSAEIFNDTENGMIRLRALANTGTSTI
TVTVTDSTGRSSTRTFTATAGADTANGGPFLSDITVPASIVAGQATTVQLQGNDVEGDAV
YYDATRVGSVNYTFNINNDTGLLTVTPPANYTGQLQISVGVRAKTGTPTTQDTFDTQLLT
FNVVANNLSAPTSVDLLANSDTGSSDSDNTTSAPTMEFVVNGTAAGATVNLRVGNDIVGT
AVATGSTTTITTALVAQLGAGTRSIVATQTLNGVTTSPSPALSLTYDNTPPAAIPTNQLP
TNVNLGSTLTYDLAHPEEGQGLRYVLENAPAGLSINATTGVMTWTPSQSQLGPQTASLRL
TDTAGNSQVQQVAINVAEAAKISVQLLPVDSQGNVLTSLSLGQEFFLRVVVNDLRNTGSP
AGDGVFSAYMDIQYDASRIELVGDQPIEYSNTFGNGRTTPSTSTAGLIDELGAFSSFTVG
PGRDPQVLAAIRMRAKASGQALFSANPAEGASRGFSIFKVDGAIDSALVNFIPTNVSVAQ
NFTAVNDTYNFNEDSTNNTLNVLANDTIVAGSGAVLTIQSVGATSNGGTVTIASNGQSLT
YAPAANFNGQETFTYTVRDQSGALGTATVTVQVASVNDNPVAVADTITTVRAGDQNVFLN
VLQNDTMGPDTGETLIVTSVTTPSQGGTATVASAGTGIVYTPRTGFTGTETLTYTISDGR
GGTSTATVTIVVGPAVPPPTVVGDAFTVTEDAAAAEFHVLANDTPAATGDTLTIINVTAP
NGTASITSNGTRITYAPKANATGTELVVYTARSTNGGVATGTITFTITAVNDAPNAVDDS
LDVLSQPNQTVNVLANDTNVDTGESYTITSVTQPASGQGTVQIGPNGKTLIYTAPSTTYT
GTVTFSYTISDGSTLTDSANVTLRVLNFVPRDVGIVLDSNLQGLPITAYYASSVGASTSP
VAQTIVRNSNGVQVSDVGPGEVQFVIPKLPFLTGEAQTIRVQSAFNDGDSLSNPVSVGTR
DARFVDIRDFMGQNLRGGVTAAVVPNQSARWFESQGTWGTYRNVSITMNQAGTSVTLRAI
NPSNQSVEATLPVTDSRIQIRARDGNAMLIRLRAEPAQIFTSTSTSTSTSTNGNGEGEGG
ATADSVLSPTSVDAAMEQIRTSESSPSTESASSTASTPPAAPATWDTSAVPIEELDAIAQ
SISTGYRRGFRTR
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgttgagagatcgcccctacaagatcattcgctttccgaggcaagaaactgg
tttcgcgctctcctgcggcgggttctcgatgacggctcgacgaggacaactcgaccgatt
cactttgaacccctggaaacacgccaattgatggcgtccgacttttattccagtgcagcg
ggctactccaacggtctcgattcctccgcattcggagactcggcctactacacgagcggc
gtcatggacagttcctccttggtcggggaaggagaagacgcgcccaatctggtcgagttc
gccaaggctttgcagcaggcgggggtacggttcttcggcgcggactggtgtcctttgtgc
accgagcaaaagaatctgttccaagacgggaagaattacctcccatttatcgaaatgacc
aaccctgatcgcacgcgtaatgcgacggcgatcagcgaaaatgtgaccgaatatcccact
tgggaattcgccaatgggacccgtgtcacgggggtccagaccctagcccagctttcggcc
ctgtcgggtgttgcgattccatccggaagcgatccgaccatcgtcgagatcccgaaccag
acggttctcaacggatctccgttgcacgttcctatcgacgcgtatgaccccaacggcggt
ccgctgacgatcaccgtgcagagcagcaacccctcggtgatcgccgccgagatggtgacc
aaccagaaatcgctccgcttgaatatcaacggttatggcgagatggtcttccggctcttc
gccgacgaggcgccccgtccggtgtcccgcattgaacagttggtaaacagcggtttctac
aaccagtctggttcgaacaagattattttccaccgagtgatcgataacttcgttttgcag
gcaggcgatccgaccggaaccggcagtggtggctctacccttgccgattttgacgaccag
ttcgatttcgatttgcagcacaaccgaacggggattctttcctacgccaagtcggcggac
gataccaacgattcccagttcttcatcaccgaaggggctcaacggcaccttgatttcaac
cactcgatctttggtcaattggtcgagggagacgccgttcgcgaaggaatctctcgaacg
caggtttccaactcacggcctgtgaacgaaatttcgatcaacagcgccgagatcttcaat
gacaccgaaaacggaatgatccgattgcgggcgctcgctaacacggggacctccaccatc
acggtcactgtgacggattccacagggcgcagttcgacgaggaccttcaccgcgacagct
ggcgccgataccgccaacgggggtcccttcctgagcgatatcaccgttcccgcttcgatc
gtcgcaggccaagccacgacggttcagctgcaagggaacgatgtggaaggggacgcggtt
tactacgacgcgacgcgggtgggatcggtcaattacacgttcaatatcaacaacgacacc
ggtcttcttacggtgaccccgccggccaactacacgggccagcttcagatctcggtcggc
gtgcgcgcaaagaccggaacgccgacgacacaggacacgttcgatacgcagctgctgacg
ttcaacgtggtggccaacaatctctcagcgccgacgagtgtcgatttgctggccaactcc
gataccggttcgagcgactcggacaataccaccagcgcaccgaccatggagtttgtcgtc
aatgggacggcggccggagcaaccgtgaatcttcgcgtcgggaacgatatcgttgggact
gcggtcgctacaggctccaccaccaccatcacgacagccctcgtggcgcagttgggagcg
gggacgcggagcatcgttgccacgcagactttgaacggtgtcaccacttcgccatctccc
gcgctctcgctcacttacgacaacaccccacccgccgccatcccgaccaatcaattgcca
acgaatgtgaacctcggttccacgttgacctacgacttggcccatcccgaggaaggacaa
gggctgcggtatgtgcttgaaaacgcacccgcaggcctatcgatcaatgcaacgaccggc
gtgatgacttggactcccagtcaatcgcagcttggtccccagaccgcctcgctccgtcta
acggataccgccgggaactctcaggtgcagcaagttgcaatcaatgtcgcggaagcggca
aagatttccgtgcaattgctaccggtcgattcgcaggggaatgtgctgacctccctctcg
ctaggccaagagtttttcctacgggtcgtcgtgaatgacttgcgaaatacgggcagtcct
gccggagacggagttttctcggcctacatggatatccagtacgatgcgagccgaatcgaa
ctcgttggcgatcaaccgatcgaatacagcaatactttcggcaatggccgaacgacgcct
agcacctcaacggcgggattgatcgatgagctcggagcgttctccagctttacggttggt
cctggccgcgatccgcaagtcttggccgcaatccgtatgcgtgcaaaagcgagcgggcaa
gctctcttctcggcaaatccagccgaaggggccagccgtggcttctcgatcttcaaggtg
gatggtgcgatcgattccgcgctggtgaatttcatcccaactaacgtttccgtcgctcag
aacttcacggcggtgaacgatacgtacaacttcaacgaagactctacgaacaacacactc
aatgttcttgccaacgacaccatcgtcgcgggttcgggtgccgtgctcaccattcaatcg
gtaggggcgacttccaatggcggtactgtcacgattgcatcgaacggacaatcgctaacc
tacgctcccgccgcaaacttcaacggtcaagaaacgttcacttacaccgtgcgtgatcaa
tccggggccttggggacggcgaccgtgacagtgcaagtcgcttcggtgaacgacaatccc
gtcgcggttgcggacacgattacgacagtgagagctggggatcaaaatgtcttcttgaat
gtcctgcaaaacgacaccatgggacctgacacaggggaaacccttatcgtcaccagtgtc
acgacgccttcgcaaggcggcacggccacggtggcatcggcagggactggaatcgtctat
acgcctcgaaccggcttcaccggaaccgagacgttgacgtacaccatcagcgatggacgc
ggcggaacttcgacggcgaccgtcacgatcgttgtcggtcccgcggtaccacctcctact
gtcgtcggcgatgccttcaccgtaaccgaggacgcagcggctgccgagttccatgttctt
gccaacgatacgccggcagcgaccggcgatacattgaccatcatcaatgtgaccgcacct
aacggtaccgcgtcgatcaccagcaacggcacccgtattacctacgcgcccaaagcgaat
gcgaccgggaccgaactggttgtctatacggcgcgcagcacgaacggtggcgtcgcaacc
ggcacgatcaccttcaccatcacggcagtgaacgacgcgcccaacgcggtcgacgatagc
ttggatgtcctgtcccagcccaatcaaacggtcaacgtcctggccaacgatacgaatgtc
gatacaggcgagtcttacaccatcacgtcggttacccaaccagcatctgggcaaggaact
gtgcagatcggccccaatggtaagaccctgatctacaccgctccgagtaccacgtacacc
ggcacggttactttttcctacaccatcagcgacggaagcacgttaaccgattccgcgaat
gttacgctgcgcgtgttgaactttgtacctcgcgacgtgggcatcgttctcgatagcaac
ctgcaaggcctgccaatcactgcttactacgcctcgtcggttggcgcttcgacctcgccg
gtcgctcaaaccatcgttcgcaattcgaacggtgtgcaagtctcggatgtggggcctggg
gaagtccagttcgtgattccaaaactgccgttccttaccggggaagcccaaacgattcgc
gtgcagtccgcgttcaacgatggagactcactttccaatccggtcagcgtcggtacccgc
gatgctcgattcgtcgacattcgggacttcatgggccaaaacctgcgagggggagtaacc
gccgcggtcgtccccaatcaatcggctcgctggttcgaatcgcaagggacttgggggacc
taccgaaatgtctctatcaccatgaaccaagcgggaacgtcggtcaccctgcgagcgatc
aatccatcgaaccaatcggtcgaggcgacgcttcctgtcaccgatagccgaatccaaatt
cgagctcgggatggcaatgcaatgctgattcgccttcgcgcggagccagcgcagatattc
accagtacgagcaccagcaccagtacgagcacgaatggtaacggcgaaggcgaaggggga
gcgacagcggattctgttctaagtcctacctcggtggatgccgcgatggagcaaattcgc
acgagtgaaagttccccatccacggaaagtgcctcgtccacagcgtccacgccacccgcg
gctcccgcgacgtgggatacttcggcagtccctatcgaagaactggacgctatcgctcag
tcgatatcgactgggtaccgacgtgggtttcgaactcggtaa
DBGET
integrated database retrieval system
