Pirellula sp. SH-Sr6A: VN12_12495
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Entry
VN12_12495 CDS
T04360
Symbol
rluD_2
Name
(GenBank) Ribosomal large subunit pseudouridine synthase D
KO
K07146
UPF0176 protein
Organism
pir
Pirellula sp. SH-Sr6A
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09190 Not Included in Pathway or Brite
09194 Poorly characterized
99996 General function prediction only
VN12_12495 (rluD_2)
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GFIT
Motif
Pfam:
PseudoU_synth_2
UPF0176_N
Rhodanese
Rhodanese_C
Motif
Other DBs
NCBI-ProteinID:
AMV32939
UniProt:
A0A142Y138
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Position
3057552..3059375
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AA seq
607 aa
AA seq
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MSSIVNIAAYKYVELDDLDNRRLHLKQITAEWQLKGTILLSHEGINLFLAGERVAIDAFL
GFLRASHPGLADLVVKESLTDYQPFHRMLVKLKKEIIPVGDGGKLAVQVQDRVVEVEPME
NASPKLPPQELKRWLDEGKPIALLDTRNTYETDLGTFEGAIDLRLRTFREFPQAAASLPD
EVKKNPVVMFCTGGIRCEKIGPYMKGLGFENIYQLEGGILKYFEECQQSHYHGDCFVFDQ
RVAVDPNLSPSDSYECFACKHVLSSEEIQSDRYREGQFCPYCYQAEEERKEARQTRIRQI
ASEQRGCVPYENRRWISIPQRFAGLPLLDALCQFMPGYGKEAWIEAIDQGLVQCPRRNYQ
PASAQEIVQEGARFLHSQPGTVEPPVSESIDLIDEDEALVVVSKGAPLPVHPSGRYARNT
LVSILQEAYAPEKLRPCHRLDMNTTGLVVFARRYKVAQAVQQQFADGLVEKVYRVQVDGI
VEWDCIECNEPISKESLPNGGRCIDRKGQHAHSIFTVLERSENSTTLEARLITGRTHQLR
LHLASLGHPVVNDPLYLPGGNTRSQPDEVRMAQPMQLHCHRMALRHPITNQRVEWVASRE
PNARFFS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcatcgtcaacatcgccgcatacaagtacgttgagctcgacgacctagacaat
cgtcgccttcatctcaaacaaattaccgcggagtggcagctcaaaggaaccattcttctg
agccacgaaggtatcaacttgttcctagccggagaacgggtcgcgatcgatgcctttttg
ggttttctccgcgcatcccatccaggcctggccgatttggtggtaaaggaaagcctcacc
gactaccaaccgtttcatcgcatgttggtcaagctcaagaaggagatcatccccgtcggt
gatggaggcaaactcgccgtgcaggttcaagaccgcgtggtggaggtcgagccaatggaa
aatgcgtccccaaaactccccccccaggagttgaaacggtggctggacgaagggaagccg
atcgcattgttagacacccgcaatacctacgaaaccgatttgggtacattcgagggtgcc
atcgatttacggctgcgaacctttcgcgaattcccacaggctgccgcctccctgcctgac
gaagtcaaaaagaatccggtcgtgatgttctgcaccggcggcattcgctgcgagaaaatc
ggtccctacatgaaggggcttggcttcgagaacatctatcagctggagggtgggattctc
aagtacttcgaagagtgccaacagtcccattaccatggcgattgtttcgtctttgatcaa
cgcgttgccgtcgacccaaacttgtccccctccgactcgtacgagtgctttgcgtgcaag
cacgttctcagttccgaagagatccaatccgatcggtaccgcgaaggccagttttgcccc
tactgctaccaagccgaagaggagcgaaaagaggcgagacaaactcgcattcgtcagatc
gcttcggagcagcgagggtgtgtcccgtacgaaaatcgacgctggatctccatcccacaa
cgattcgccggcctgccgttactcgacgcgctttgccagttcatgccgggatatggcaag
gaggcttggatcgaagcgatcgatcaaggactcgtgcaatgccctcgaagaaactaccag
cccgcttcggcgcaggagattgttcaagaaggggcgagattccttcactcccagcccggg
acagtcgaaccaccggtgagcgagtcgatcgacttgatcgatgaagacgaagcgctcgtt
gtggtgagcaaaggggctcccctgccggttcacccctctggacgttacgcgaggaatacg
ctggtatcgatcttgcaggaggcgtacgcgccggagaagcttcgcccctgccatcgtctg
gacatgaacacgacaggattggtggtgtttgcgagacgctacaaggttgcgcaagccgtt
caacagcagttcgccgatggattggtggagaaggtgtatcgcgttcaagtggacgggatc
gtggagtgggattgcatcgaatgcaatgagcccatctcgaaagagtcgctccccaatggc
ggtcggtgcatcgatcgaaaggggcaacatgcccattcgatctttaccgttttggagcga
agcgagaattcgaccacgttggaagcgagactgatcaccggacgcacccatcaactccga
ttgcacctggcatcgctgggacacccggtcgtcaatgatcctttgtatttaccagggggg
aacacgcgttcgcagccagatgaagttagaatggcacaaccgatgcagcttcactgccac
cgtatggcgctgcggcaccccattacgaatcagcgcgtcgagtgggtagcctctcgagaa
cctaacgcacgattcttttcctaa
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