Pirellula sp. SH-Sr6A: VN12_13520
Help
Entry
VN12_13520 CDS
T04360
Symbol
sigA_2
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VN12_13520 (sigA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pir03021
]
VN12_13520 (sigA_2)
Transcription machinery [BR:
pir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VN12_13520 (sigA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Miga
HetR_C
COG3_N
Motif
Other DBs
NCBI-ProteinID:
AMV33139
LinkDB
All DBs
Position
complement(3327539..3329101)
Genome browser
AA seq
520 aa
AA seq
DB search
MFDGLLDFDDDLPRSADDLDGLRKLSLEEEGDDLGDTVVDVVVPEDQVQLESDDDLLSGM
DEIETWSDDPVRMYLTQMGEIPLLTRQEEIRLAKKIEVTRRRFRTKLLECDYVVQYAFKI
LKRVHTGELPFDRTVQVSVTDRLEKDQILGRLPHNLKTLDVLLKRNRRDYRNALSKSVPE
RKRLEAWQSLARRRRKAVRLIEELGLRTQRIEAMISVLERLSQRVDEILHDLATLKSHQV
APSQVAQLKREYRQILVATQETPSSLRNRVAMVKKVFTEYQRAKKQLSEGNLRLVVSIAK
KYRNRGLSFLDLIQEGNAGLMRAVDKFEYRRGFKFCTYATWWIRQAITRAVADQSRTIRI
PVHMVETMSRVRNVSRQLLQELGREPTLEETARRAETTIEEARRVLAMSRYPISLDRPVG
NSEDSQFGDLLPDGTAESPAIGAGQEMLRLRINSVLKTLSYREREIIKLRYGLGDGYSYT
LEEVGHIFKVTRERIRQIEAKAVRKLQQPSRSQELVGFLD
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgacggcctgttggatttcgatgatgatttgcctcgcagcgctgacgacttggat
ggtcttcgcaagctgtcgcttgaggaggaaggtgatgatctgggcgatacggttgtcgat
gtcgtagtaccagaggaccaagtccaattggagagcgatgatgatttgctctccggaatg
gacgaaatcgaaacttggtcggacgacccggttcggatgtatttgacgcagatgggagag
atcccgttgttgacccgtcaagaagagatccggctggcgaagaaaatcgaagtcacccga
cgacgattccgcaccaagctgctcgagtgcgattatgtggtccagtatgccttcaagatt
ctcaagcgtgttcatactggcgaactgccattcgatcgcacggtccaagtctcggtcacc
gaccggcttgaaaaagaccagattttgggacggttgccgcacaaccttaaaacgctcgat
gtccttctcaagaggaaccgtcgcgattaccgcaatgctctgagcaagagtgttccggaa
aggaagcgtttggaggcttggcaatccctggcgagacgccggcggaaagcggtccgtctt
attgaagaactagggctgcgcacgcagcgcatcgaagcgatgatcagcgttctcgaacgt
ttgagccaacgcgtcgatgaaatcctccatgatttggcgaccctcaaatcgcaccaagtg
gcaccttctcaggtggcgcagctgaagcgagagtaccgccagattttggttgcaacccag
gagactccatcctcgcttcgcaaccgcgtcgcgatggtgaaaaaggtcttcaccgagtac
cagcgagcgaagaagcagcttagcgaaggcaatctgcggctcgtcgtctctatcgcgaag
aagtatcgaaaccgcggtctcagcttcttggatctgatccaagaaggaaacgcaggtttg
atgcgagcggtggacaagttcgagtatcgacggggctttaagttctgtacgtatgcgact
tggtggatccggcaggcgatcacgcgcgccgtagcggatcaaagccgaaccattcgaatt
ccggttcacatggtggaaaccatgtcccgcgttcgcaatgtttcccgccaattgctgcag
gagcttggccgcgaaccgaccctcgaagaaacagcacgacgggccgaaacaacgatcgaa
gaagcgcgacgtgtgttggcgatgagccgataccccatttcgctcgatcgaccggttggc
aatagcgaagacagccaattcggggacttgctcccagacggcacagccgaaagcccagcg
atcggcgcggggcaagagatgttgcgattgcgaatcaactcggtcctcaagaccctgagt
taccgtgaacgcgagatcatcaagcttcgatacggtctaggcgatggctacagctacacg
ctcgaagaagtcggacacatcttcaaagtgacgcgagaacgtatccgtcaaattgaagcc
aaagcggttcgcaagttgcaacagcccagccgttcgcaagaactcgtcggcttcctcgac
taa
DBGET
integrated database retrieval system
