Pirellula sp. SH-Sr6A: VN12_13775
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Entry
VN12_13775 CDS
T04360
Symbol
hrpB_2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pir
Pirellula sp. SH-Sr6A
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pir03019
]
VN12_13775 (hrpB_2)
Enzymes [BR:
pir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VN12_13775 (hrpB_2)
Messenger RNA biogenesis [BR:
pir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VN12_13775 (hrpB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
HA2_N
bMERB_dom
AAA_23
AAA_25
SLFN-g3_helicase
ABC_tran
Cas3-like_C_2
RsgA_GTPase
FtsK_SpoIIIE
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AMV33190
UniProt:
A0A142Y359
LinkDB
All DBs
Position
3400699..3404916
Genome browser
AA seq
1405 aa
AA seq
DB search
MRGGFYRSRATLRCSLGTFMNQAPSGERNRSQSLCPLPQDRLLHRHYLRLKQQRDRILRI
PDGKRREADLQRWEHLLAQSLETYERRQKVPRNLSYDPELPITAAREKIIDLLRHRQVVV
ICGETGSGKSTQLPKLCLEAGFGQTGWIGHTQPRRIAARSVAARVAEEMDSKLGDAVGFK
VRFNDQTKPESWIKLMTDGVLLAEIQRDRFLDAYDCIIVDEAHERSLNIDLLMAYLQRLL
PKRPELRVVITSATIDAERFSEHFVDALGPAPVVMVEGRSYPVEIRYRGANDKRALSRET
GEWSEDESQLARFCDAVDELFAEGRGDILAFFPTERDIRDAAKLLRGHLTQRGMVQHVEV
LPLYARLTEAEQQRVFQPHSKTRIVLATNVAESSLTVPGIRYVIDTGTARVSRFAAKSKV
QRLPIEPIPQASANQRSGRCGRLGPGIAIRLYDEQDFLSRPPFATPEIRRSDLAATIVHT
KSLGIEDIEGLPWLDPPRPDAVREGMNVLRELGALDAEDRLSDVGRKLARWPVDPRVGRM
IIAAEANGCLHEMLIVAAALETQDPRIRPPEKSGAADEAHLRFKDPLSDFLAYLRIWDFY
QGLREQLGRSRLTRALQENFLSIIRLREWADVHRQLLEHCKDSKVSTHKPSVALEPLDLA
PSLRPETGRRGDRKGESAPDPKANTQYPKGYDQLHLSLLTGMLSGIAMMEDTGKYRGAQN
LEVVLWPGSGIRSAKPKWIVSAERIETTQRYARTAAKIEPEWIERVAAHLIKYSYEEAHF
SRKQGRAMVMRRGTLFGLPVSPRIAVSLAPLNAPLARTLLIEHGLAGGELVSRAKFWMHN
QAFMEQVQSLADRTRRRDLILDPQVLIDFYEKRIPTAVVDRNTLEQWDRTLKREANNTSP
YLDWNDVLLPIDKVEVDAQYPSQVSVGVTQLNLKYRFEPGHETDGVSVSIPAAVVHQIHP
DRLDWLVPGLLEEKLIQLIKSLPKRLRRQLVPVPDTAKLLVPKWLAAFQSQLPFWKSLCE
ILSNHLREPVVRDDFDMASLPEHLRMRIEVLDEEGKVVQTGRDLEAIQRERQHVVHQAIQ
THAPSTSYDWMRSKLEKWDIEQLPRSVTELRGGVRVELYPTLLTTPEQMQTITVDHPLLA
EQLLRIGWTRLMHRIDRKEIRSHIQYLPQFSTSGLWLSDRLPGDKLRDWLGDIIARLAFL
DTQWHLESLTQVPRTLVEFDLARLKRIERIGLAAGEVARWLPKLAEANHKVRALLERAPS
SWGPSLQQIKNQLTCLWSPHSAWLTPWVILKEYPRYLQSLAVRIDKLKATGCTKDMAIEE
TAHRFWVDYESRIERQQPSAATWQSVRSKARDALGVDTLSPTGKLLEYRWGIEELRVSLH
SQQLGTRISISPKRLEKLQQDLDQR
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcggtttttatcgttctcgcgcgactcttcgctgttcgctgggaacgttcatg
aaccaagctccttcgggggaacgcaatcgttcgcaatctctctgtccgcttccccaagac
cgattgctgcaccgccactacctgcggctcaaacaacaacgagatcgcatcctccgcatc
ccggatggcaagcggagggaagccgatctccagcggtgggaacatctgctcgcccagtcg
ctggaaacctacgagcgacggcaaaaggtacctaggaatctttcgtacgatcccgagcta
cccatcaccgccgcgcgggaaaagattatcgatctgctccggcatcgccaggtcgtggtc
atctgcggcgaaaccggttccggaaaaagcacccagctccccaaactctgcctcgaagct
gggtttggccaaacgggctggatcgggcatacccaaccgcgaaggatcgcggcccgttcc
gtcgcagcccgagttgccgaagagatggattccaagctcggggacgcggttggttttaaa
gttcggttcaacgaccagaccaagccggaatcctggatcaaactgatgaccgatggggtt
ctcctcgccgagatccaacgggaccggttcctcgacgcatacgattgcatcattgttgac
gaagcgcacgagcgttcgctcaacatcgatctcctgatggcgtacctgcaaaggctttta
ccgaaacgcccggaacttcgcgtggtgatcacgagcgctacgatcgatgcggagcgtttc
tcagaacactttgtcgacgctctggggcccgcacccgtcgtcatggtagaggggagaagc
tatcccgttgaaatccgctaccgaggtgctaacgacaaacgagccctctcgcgtgaaacc
ggagagtggagcgaggacgaaagtcaattagcgcggttctgcgacgcagttgacgaactg
ttcgcggaagggcgaggtgacatcctggccttcttcccgaccgaacgcgatattcgcgat
gcggccaaactcttgcgagggcatttgacccagcgaggtatggttcagcatgtcgaggta
ttgcccctctacgcgagacttaccgaagccgaacagcaaagggtctttcagccccacagc
aaaacgcgcatcgtgctggcgaccaacgtcgcggaaagttcgctcaccgtcccgggaata
cgctatgtgatcgataccggtaccgcccgcgtctcccgcttcgccgccaaaagcaaagtc
caaaggctccccatcgagccgattccgcaggcctccgcgaatcaacgctccggccggtgc
ggacggttgggtcccggcatcgccattcgcctttatgacgagcaagactttctgagccgc
cccccctttgccacccccgagatccggcgaagcgatttggccgcgaccatcgtgcatacc
aaatccctggggatcgaggacatcgagggtttgccatggctggacccgcctcgcccggat
gcggtgcgcgaagggatgaatgtcctgcgcgaattgggcgctctagatgccgaagaccgt
ttgtccgatgtaggtcgaaaactcgctcgatggcctgtcgatccccgcgtcggacggatg
atcatcgccgccgaagccaacgggtgcttgcatgaaatgcttatcgttgccgccgcactc
gagacgcaggacccccgcatccgccctcctgaaaaaagtggtgcagccgacgaagctcac
cttcgcttcaaagatcccctcagcgattttctcgcctaccttcgcatttgggacttctac
caagggctgcgtgagcaattgggccgttcccgcttaacgcgagcgttgcaagagaacttt
ttgtctatcatccgactccgggaatgggccgatgtccatcggcaacttctggagcattgc
aaagactccaaagtctcgacacataaaccatccgttgcactggagcctttggacctggcc
ccaagtctccgccccgaaacaggacgtcgaggggatcgaaaaggggaaagcgcacccgat
cccaaagccaatacgcaatatccaaaaggatacgatcagcttcatctctctttgctcacc
ggcatgctctctggcatcgctatgatggaggatacgggcaagtaccgcggtgctcaaaac
ttagaggttgtgctatggcccggctcgggcattcgaagcgcaaagcccaaatggatcgtc
tcggccgaacgcatcgagacgacccaacgctacgcgagaactgccgcgaagatcgaaccg
gaatggatcgaacgggtcgctgcccatttgatcaagtacagttacgaagaagctcacttc
agccgaaaacagggacgtgcgatggtcatgcgccgcggtaccctttttgggctcccggtt
tccccgcgaattgcggtttccctcgcgccattgaatgctcctctcgcccggacgctgctg
atcgagcatgggttggcgggcggagaactggtgtcccgggccaaattctggatgcacaac
caagcctttatggagcaagtgcaatcgctggccgatcggacccgccgacgagatctcatc
ctcgatccgcaagtcctcatcgacttctacgaaaagagaatcccaaccgccgtcgtcgat
cgcaataccctcgagcaatgggatcggactctcaagcgagaggcaaacaacaccagtccc
tacctcgattggaacgatgtcttgctcccgatcgataaggtcgaggtcgatgcgcaatac
ccctctcaagtctcggtgggagtgacccaattaaatctcaaatatcgttttgagcccggt
catgaaaccgacggagtcagcgtcagtatcccagcagcggtcgttcaccaaattcatccc
gaccgcctggattggctggtccccggattgctcgaggagaagctgattcaactgatcaaa
tcgcttcccaagcgtttgagacgacagctggttcccgtcccggacaccgccaagctgttg
gtacccaaatggctcgctgcattccaatcgcagctgccgttctggaaatccctatgtgag
attctctccaaccatctgcgcgaaccggtcgtgcgcgacgacttcgatatggcgtcgctg
ccagagcacttgcgcatgcgtatcgaagtgctcgacgaggaaggaaaggtagtccagacc
ggacgggatttggaagcgatccagcgcgaacgtcagcatgtggtgcaccaggccattcag
acgcatgcgccgtcgacttcgtatgactggatgcgaagcaagctggaaaaatgggatatc
gagcagcttcctcgatcggtcacggaattgcggggtggggtacgtgtggaattgtatccc
acattgctgacgacccccgagcagatgcaaaccatcaccgtcgatcatcctcttctggcc
gagcagctcttgcgaattggctggacccgactgatgcaccggatcgatcggaaggaaatt
cgaagccatatccaatacttgcctcaattctctaccagcggactatggctatccgaccga
ttgccaggggacaaactccgcgattggctcggagacatcatcgcccgattggctttcctg
gatacccaatggcatttggagtcactaacacaggttcctcggacactagtcgaatttgat
ttggccagattgaagcggatcgagcgaatcggtctcgcagcgggcgaagtagcccgatgg
ctaccgaagctggcggaagccaatcacaaagtgcgagcgctcttggagcgtgccccttcg
agttggggtcccagccttcaacagatcaaaaaccaattaacctgcttgtggagtccccat
tcggcatggctcaccccttgggtgatcctcaaagagtatcctcgctatcttcagtcactc
gcggtccgcatcgacaagctcaaagcaacaggatgcaccaaagacatggcgatcgaggaa
accgctcatcgattttgggtggattacgaatcgcgtatcgagcgacaacaaccctccgcg
gctacttggcaaagcgtgcgaagcaaagcgagagacgccttaggtgtcgatacattgtcg
ccgacgggtaagctgctggaataccgctggggtattgaagagttgcgagtctcgctccac
tcccagcagctcggcacccgaatcagcatctcccccaagcgtctcgaaaaactccaacag
gacctggatcaacggtaa
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integrated database retrieval system
