Pirellula sp. SH-Sr6A: VN12_14190
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Entry
VN12_14190 CDS
T04360
Symbol
mutM
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VN12_14190 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_14190 (mutM)
Enzymes [BR:
pir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VN12_14190 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VN12_14190 (mutM)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VN12_14190 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
DUF5817
Motif
Other DBs
NCBI-ProteinID:
AMV33273
UniProt:
A0A142Y236
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All DBs
Position
3495125..3495940
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AA seq
271 aa
AA seq
DB search
MRRGLLPIVGSRITEVEFPEIPYRPIVVLPDREAFARGCLGKQIRDVRRIAKRVLVDLDN
GLSIVMQPKMAGIAMLRDAPSPQHIRVLFHLDRPAPHDQFLYWDRRGLGNVCLWSQAEID
AVLGPNRLGPDASIVDADLFVSRFRECNREVKVAMLDQSLVAGIGNLYAAEILFAAKIHP
QQRCTDLSTRQWKRIHEETIRILQQAIENEGSTLKDGTYRNAINGEGGYQSMHRVYDREG
LPCTRCSKGTVQRIVQGQRSTFFCPRCQKIQ
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcggagaggtttgctccccatcgtcggcagtcgtatcaccgaggtggaatttcccgaa
attccctaccgacccatcgttgtactgccggatagagaggcgttcgcacgaggatgtttg
gggaaacagatccgcgatgtgcgacggatcgccaaacgggtgctggtagacctcgacaac
ggattgtccatcgtgatgcaacccaaaatggccggcatcgcgatgcttcgcgatgcgccc
tctcctcagcatattcgagtcctctttcatctcgatcgccccgctcctcacgaccagttc
ctctattgggatcgccgggggctggggaacgtttgcctttggagccaggctgagatcgat
gcggtgctaggcccgaatcggctcggccccgacgcatcgattgtcgatgcggatctcttc
gtgtcacgatttcgagaatgcaatcgcgaagtcaaagtggccatgctagaccaatccctc
gtcgcagggatcggaaacctttacgcggccgaaattctctttgctgcaaagatacacccg
caacagcgatgcaccgatttgtccactcgccaatggaaacgaatccacgaagaaaccatt
cgcatcctccagcaagcgatcgagaatgaaggctcaacgctcaaagatggaacctatcgc
aatgccatcaatggagaaggaggataccaatcgatgcaccgagtctatgaccgcgaaggc
ttgccctgcacgcgttgctccaaaggaacggtgcaacgtattgttcaggggcagcggagc
acgttcttttgtccccgctgccagaaaattcaatag
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