Pirellula sp. SH-Sr6A: VN12_14475
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Entry
VN12_14475 CDS
T04360
Name
(GenBank) Uracil DNA glycosylase superfamily protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VN12_14475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_14475
Enzymes [BR:
pir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
VN12_14475
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VN12_14475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DUF3787
Motif
Other DBs
NCBI-ProteinID:
AMV33329
UniProt:
A0A142Y255
LinkDB
All DBs
Position
complement(3560072..3561010)
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AA seq
312 aa
AA seq
DB search
MNSWASQAAKQLFQSWARCGVTHVPRPSEAGVRDAEKWVDQWSVDSGVEAAKNLGVHPSL
PSNNDALAQPSSEIKVAAPAQPATVPTPLPPAAHQRTTAPLPNLPAGQTTWSERPLELAA
RVERFRVLQEEVAACRKCTEIVCRRQKTVFGVGPTNARIVMFGEAPGADEDRAGEPFVGA
AGQLMDKILVASGLSREEVYIMNALRCRPPNNRTPTEAEVENCRPFFETQLETIQPEYIV
CWGAVAVRAVLRSTESVGRLRGKFHNYRGAKVMVTYHPAYLLRNPDAKRLTWDDMKMLMR
ELGIPIPPPKRA
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgaactcctgggcatcgcaggccgccaaacaactctttcaatcctgggctcgatgcggc
gtgacacacgtcccgcgtcccagcgaggcaggggtccgcgacgcagaaaagtgggtggac
caatggagcgtcgattcgggggtcgaagccgcaaaaaacctcggtgtgcacccaagcctc
ccttcgaacaacgatgcgctcgcacagccctcatcggaaatcaaggttgcagctcccgca
caacctgccaccgttccaactccgctcccacccgccgcccaccagcgaacgaccgctccc
ctgccaaacctccccgcaggacaaaccacgtggagtgaacgtccccttgagctcgcggcc
agggtcgagcgctttcgtgttttgcaggaagaagtggctgcctgtcgcaagtgcacggaa
atcgtgtgccgccgccaaaagacggtgtttggagtcggaccgaccaacgcgaggattgtg
atgttcggcgaagcccctggggccgacgaagatcgtgcaggagaacccttcgtcggtgcc
gcggggcagctaatggacaagatcctcgtcgcatcgggcttgagccgcgaagaggtctac
atcatgaacgctctgcgatgccggccaccgaataaccgcaccccaaccgaagccgaagtc
gaaaactgcagacccttcttcgaaacccaattggaaaccatccaacccgagtacatcgtc
tgctggggcgcggtcgccgttcgggccgttcttcgttccaccgaaagcgtggggcgattg
cgaggcaaattccataactaccgcggtgcgaaagtcatggtgacttatcatcccgcctac
ctcctccgcaatcccgacgcgaaacgacttacgtgggacgatatgaaaatgctcatgcga
gaactcggcatcccgatcccaccacccaaacgagcctaa
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