Pirellula sp. SH-Sr6A: VN12_14620
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Entry
VN12_14620 CDS
T04360
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K05788
integration host factor subunit beta
Organism
pir
Pirellula sp. SH-Sr6A
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pir03032
]
VN12_14620 (hup)
03036 Chromosome and associated proteins [BR:
pir03036
]
VN12_14620 (hup)
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_14620 (hup)
DNA replication proteins [BR:
pir03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VN12_14620 (hup)
Chromosome and associated proteins [BR:
pir03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VN12_14620 (hup)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VN12_14620 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Mnd1
DbpA
DUF4777
KORA
Motif
Other DBs
NCBI-ProteinID:
AMV33357
UniProt:
A0A142Y2C7
LinkDB
All DBs
Position
complement(3598004..3598390)
Genome browser
AA seq
128 aa
AA seq
DB search
MTKKEIVKTISDETGINQQKIKAIVQRTFDAIVKTLEEEGRIELRNFGVFQVRTRAARKA
RNPRTGRQVEVPEKFVVTFKPGKIMEERVNAIEGTPLAQRIRDDIASGRIDVSDEELDSD
NDSDSTLL
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaagaaagagatcgtgaaaacgatttccgatgagaccggtatcaaccagcaaaag
atcaaggcgatcgttcagagaacgttcgatgcgatcgtgaagacgctggaagaggaaggt
cggattgaactccgaaatttcggcgtattccaagttcgaactcgagcagcgcgaaaggct
cgcaaccctcggacaggccgccaggtggaggtccccgagaagtttgtggtgactttcaag
ccggggaagatcatggaggagcgagttaacgcgatagagggcactccactcgcacagcgg
attcgagacgacattgcgtcggggcggatcgacgtcagcgacgaggaactcgattccgac
aacgactcggattccacgcttttgtag
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