Pirellula sp. SH-Sr6A: VN12_16400
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Entry
VN12_16400 CDS
T04360
Symbol
recQ_3
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN12_16400 (recQ_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pir03019
]
VN12_16400 (recQ_3)
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_16400 (recQ_3)
Enzymes [BR:
pir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VN12_16400 (recQ_3)
Messenger RNA biogenesis [BR:
pir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VN12_16400 (recQ_3)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VN12_16400 (recQ_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
HTH_22
HTH_38
KfrA_N
Motif
Other DBs
NCBI-ProteinID:
AMV33711
UniProt:
A0A142Y3G0
LinkDB
All DBs
Position
4101257..4103509
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AA seq
750 aa
AA seq
DB search
MSSTPALPVDSIVTESAFSQMLMKVWGYDSLRPSQRDAVESILQRRDTLVVMPTGGGKSL
CYQAPAVYSGGLTVVVSPLLALMKDQVDALRSVGVCAVRVDSTLNAEEKREAARLVRSGE
ARLLFVSPERLLTNDFLRFLSEYPPHTFAIDEAHCVSQWGHDFRPEYRQLGQLRGSFPKA
AIHAFTATATQRVRQDIVAQLQLRDPNVLVSSFDRPNLNYRIIPRENLFTQVYEICDRAR
GTGGIVYCMRRRDVEEHAAYLVSKGISAVGYHAGMTHEERKRAQEAFVGETVDVVVATVA
FGMGIDRSNVRFVVHAAMPKSIEHYQQETGRAGRDGLPADCTLFFSAADAITIRRLTEKS
LLDAHADEAILQSTLQHLEDMVNYCRVPKCRHRALVEYFAETYPRPSCGACDVCLGETDC
IHEAKEVAQKILSCVFRIDERFGVKYLTEVLLGANTKEVRARKHDQLSTYGILKGHTKEQ
IQDWVYQLVGQQMLRIEAGEFPIVKLGSDAKGVLRGTVTPILLRSAPKKINQTQTANLLT
EAADPSLFEALRQVRKQLASDANLPPYVIVNDRSLLEMAAVRPSSRDGLRSIHGMGESRC
KAYGEAFFACIERISAERSLNRDVRVLSDIRASDSRGVGAGSVGAPPEVIPGRQQDARKY
FRRKESIDAVATALKLSKSTIAKYLVEWLESEPCESIEPWVSRDVEAKVLEAARVTQADR
LKPIFEYLKGTVDYETIRIVLSFQGSQVGR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcacgcccgctcttcccgtggattccatcgtcaccgaatccgccttctcccag
atgctgatgaaagtctggggttacgattctcttaggccatcgcagcgcgatgcagtcgaa
tcgattttgcaacgacgcgatacgctggtcgttatgccgactgggggtggcaagtcgctt
tgttatcaagcgcctgcggtctactccggtggattgacggttgtcgtttctccgttgttg
gcattgatgaaagatcaagtcgacgcgttgcgatcggtgggagtgtgcgcggtgcgagtc
gatagcacgttgaacgccgaagaaaaacgggaagctgcccgtttggtccgttccggcgaa
gcgaggttgctgttcgtgtcaccggagcgtttgttgaccaacgacttccttcgctttctc
tcggagtatccgccccatacgtttgccatcgacgaggcccactgcgtgtcccaatggggg
cacgattttcgtcctgagtatcgacaactgggtcaactgcgtggcagttttcccaaagcc
gcgatccacgcgttcaccgcgacggccacacaacgtgtgcggcaggacatcgtggcacaa
ctgcagctgcgcgatcccaatgtgctcgtcagctcctttgatcgccccaatttgaattac
cgcattatccctcgcgagaacttgttcacgcaggtctacgagatttgcgatcgagcgcga
gggaccggcggaatcgtctattgcatgcgtcgcagagatgtcgaggagcacgcagcgtac
cttgtctcgaagggaatctcagcggtcgggtaccacgctggtatgacccacgaagaacgg
aagcgagcccaggaggcctttgtcggcgagaccgtggacgtggtggtcgcgacggtcgcc
tttgggatggggatcgatcgttccaatgttcggttcgtcgtgcacgcggcgatgccgaaa
tcgatcgagcactaccaacaagagacgggccgcgcaggacgagatgggcttcccgccgac
tgcaccttgttcttttccgcggccgatgccatcaccatccgaagactgaccgagaagagt
ctgttggatgcccacgccgacgaagcgatcctgcagtccacgttgcagcatttggaagat
atggtgaattactgtcgagttcccaagtgccggcaccgagcgttggtcgaatactttgcc
gagacctatcctaggccgtcgtgcggcgcgtgcgatgtctgtcttggggaaaccgattgc
atccatgaagccaaagaggttgcccagaaaatcctgtcctgcgtctttcgcatcgacgag
cgattcggggtgaaatacctcaccgaagttttgctcggagccaacacgaaagaggtgcga
gcgcgcaagcatgatcaattgagtacctacggtatcttgaaaggccacacgaaggagcag
atccaagattgggtctatcagttagtaggtcagcagatgttgcggatcgaggcaggcgag
ttccccattgtgaagcttggaagcgacgcaaagggagttctgcgaggcaccgtcaccccc
attttgctgcgatcggctccgaagaaaatcaaccagacgcaaaccgcgaatttgctcacc
gaagctgccgatccgtcccttttcgaggcgttgaggcaagttcgaaagcagcttgcatca
gacgcgaacttacccccgtatgtgatcgtcaacgatcgctcccttttggagatggcggcg
gtccgtcccagttcacgggacggattgagatcgattcatggcatgggtgagtcgcgatgc
aaggcatacggcgaagccttttttgcatgcatcgaacgaatctccgcggagagatcgttg
aatcgcgatgttcgggtgctcagcgatatccgcgcgagtgattcgcggggcgttggggcg
ggatcggtgggtgctcctcccgaagtcattccagggagacagcaagatgcgaggaaatac
tttcggcgcaaggagtcgatcgacgcggtcgcgactgccctgaagctctcgaagagcacc
attgcgaaatatctggttgagtggctggaatccgaaccctgcgagagcatcgagccttgg
gtgagtcgcgacgtggaggcgaaggtgttggaggcggccagggtgacgcaggccgatcgt
ctgaagcccatcttcgaatacttgaaggggacggtggattacgaaacgatccgcatcgtg
ttatcgtttcaagggtcgcaggtcggtcgctaa
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integrated database retrieval system
