Pirellula sp. SH-Sr6A: VN12_17335
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Entry
VN12_17335 CDS
T04360
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pir
Pirellula sp. SH-Sr6A
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pir03016
]
VN12_17335 (truB)
Enzymes [BR:
pir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
VN12_17335 (truB)
Transfer RNA biogenesis [BR:
pir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VN12_17335 (truB)
Prokaryotic type
VN12_17335 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
AMV33896
UniProt:
A0A142Y3V3
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All DBs
Position
4327039..4327962
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AA seq
307 aa
AA seq
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MFGLLPLYKPSGPTSRDCVNQVQRLIKPVKVGHAGTLDPIASGVLLLLVGNAVRLTDEYH
ELDKEYIGSFQLGRTSPSTDTETPCTLLPTAPSFTREDLNSVLPQFLGEIEQIPPTYSAV
RIDGERAYDLARSGKTVEMPSRMVTISCIEVLSLSVETDSTPTMTLRVVCGTGTYIRSLG
RDIARALGSDAVMSSLERTRVGSYSSANAIGADTLANRQDIANALVSPQWGLGQLPHVTL
DDDILNRFRMGQKLDWTDTPELPLASKVLASDSQGRLRAVLRFVPRDSMEGEPKDVGLWR
TEKFFND
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtttggactgcttcctctttacaaaccgagcggtcccacaagccgagactgcgtgaat
caggtccaacgcctgatcaagcccgtgaaagtagggcatgcagggacgttggatcccatc
gcatccggagtcctcctcctgctagtcggcaacgcagtacggctaaccgatgaatatcac
gaattggacaaagagtacattggctcgtttcaactcggccgcaccagtccgtcgacggat
accgaaacgccttgcacgctcctacccaccgctccgagtttcacgcgagaagacctaaac
tcggtgctacctcagttccttggcgagatcgagcagattccgccgacctactctgccgtg
cgaatcgatggggagcgtgcctacgatttggcccgtagtggaaagacagtcgagatgcca
tcccgaatggtcactatctcgtgtattgaagttctctcgctctcggtggaaaccgattcg
actccgacgatgacgcttcgggtcgtctgcgggacaggaacttatatccgttctctaggg
cgggacattgctcgagcgctcggaagcgatgccgtgatgagctcgctcgagaggactcgc
gtcgggtcttattcttcagcgaatgccattggtgcggacacactagcgaatcggcaagat
atcgcgaacgctctcgtatctcctcaatggggactcgggcagctaccgcacgtaacactc
gacgacgatatattgaatcgatttcggatggggcaaaaattggactggactgataccccg
gaattgccccttgcttccaaggttctggcgagcgattcccaagggcgtttgcgggccgtg
cttcgcttcgtgccacgtgactctatggaaggcgaacccaaggacgttgggctttggcga
acggagaaattcttcaacgattga
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