Pirellula sp. SH-Sr6A: VN12_17535
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Entry
VN12_17535 CDS
T04360
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN12_17535 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pir03019
]
VN12_17535 (rny)
Messenger RNA biogenesis [BR:
pir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VN12_17535 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
YtxH
DUF6594
Motif
Other DBs
NCBI-ProteinID:
AMV33936
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Position
4379011..4380624
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AA seq
537 aa
AA seq
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MLKLTATLDRLQFFILAADSSSSTTVTAIVFLVGVALGAGALYLINYLQGRDAKSQSQRL
LDQTKLDCENLVKTAELEKKEKLLQLQSKFDSENQKQKDELRKRESELDRKEASIKQSSD
DLRKQEKFVENNQRKVAERMEDVNRKSDQYNKLIQQAQSDLQRMTGMSIDEAKKQLLSVL
ERDLQGEMGSVILKHEKRVSEVAQQKAQDILLTAMQRYASAHTSESTTSTVDIPNDDMKG
RIIGREGRNIRAFEKVSGCDLIIDDTPGVVIVSGFDPVRREIARSAMEKLVTDGRIHPTR
IEEIVAASEKQMESFIRRKGEEAAQEVNIQGLHDRTIDMLGRLHFRTSYSQNVLRHSVEV
AFLSGLMAEMIGLDPQLARRAGLLHDIGKAADHELEGGHPKIGADILKRNGENDIVVHAA
LGHHDQLTTEYPYTLLVATADACSASRPGARRESLERYIKRMEELESIAKNFQGVEQAFA
IQAGRELRVIVSSKNTDDSIAAKVCRDIAKAFEEQLTYPGEIKVTVVRESRFTEVAR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
gtgttgaaactaaccgcaaccctggatcggctgcagtttttcatcttggccgcagattca
tccagcagtacgactgtcactgcgattgtgttcctcgtcggagtcgccctcggggcgggg
gcgctgtacctcatcaactacctgcaaggccgggatgcgaagtcgcagtcccaaagactg
ctcgaccaaaccaaactcgattgcgagaatttggtgaaaacagcagaactggaaaagaag
gaaaaactgcttcagctccaaagcaaattcgacagcgaaaaccaaaaacaaaaggacgag
cttcgcaaacgagaatcggagctcgatcgaaaagaagcgtcgatcaagcagtcgtcggac
gatctccgcaagcaagaaaaattcgttgaaaacaaccaacgcaaagtcgcggaacggatg
gaggatgttaatcggaaatcggatcaatacaacaaactgatccagcaggctcaatccgac
ctccaacgcatgaccggcatgtcgatcgacgaagcgaagaaacaactcctgtccgtcctg
gaacgcgatctccaaggcgagatgggctccgtgatcctcaaacacgagaaacgtgtaagc
gaagtggcccagcagaaggcccaggacatcctcctgaccgctatgcagcggtacgcctcg
gcccatacctcggaaagcaccaccagcaccgtcgacatccctaacgatgacatgaaagga
cgcatcatcggccgggaaggtcgcaatattcgggccttcgaaaaggtttctggatgcgat
ctgatcatcgatgacacccccggtgtagtgatcgtgagcggcttcgatcccgttcgacgc
gaaattgcccgctcggcgatggagaagcttgtcaccgacggccgcatccacccgacgcga
atcgaggaaatcgtcgctgcaagcgaaaagcagatggagagtttcattcgccgcaaagga
gaagaagccgcccaagaggtcaacatccaaggtcttcacgaccgcacgatcgacatgctg
ggacgcctccatttccgaactagctactcgcaaaacgtcctgcgacacagcgtggaagtc
gctttcttgtccggattgatggccgagatgatcgggctggacccacaacttgctcgccgc
gcaggcctcttgcacgatatcggcaaggcagcggaccacgagctcgaggggggacacccc
aaaatcggagcggatatcctcaaacgcaacggtgaaaacgacatcgtcgttcacgccgcg
ctcggacaccatgatcagctcaccaccgaatacccctataccctcctggtcgccaccgca
gacgcttgcagcgcttcccgccccggagcgcgacgagaatctctcgagcgctacatcaaa
cgaatggaagagctcgaatcgatcgctaagaatttccaaggggtcgagcaagcgttcgcg
attcaggcaggtcgcgagttgcgagtgatcgtttcatccaaaaacaccgatgattccatc
gcagctaaggtctgtcgcgatatcgccaaagcgttcgaagaacaactcacttacccaggg
gaaatcaaagtgacggtcgtgcgtgaatcgaggtttaccgaagtcgcccgttaa
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