Pirellula sp. SH-Sr6A: VN12_18030
Help
Entry
VN12_18030 CDS
T04360
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VN12_18030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pir03021
]
VN12_18030 (rpoC)
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_18030 (rpoC)
Enzymes [BR:
pir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VN12_18030 (rpoC)
Transcription machinery [BR:
pir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VN12_18030 (rpoC)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VN12_18030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
BSH_YknX
DUF2171
Motif
Other DBs
NCBI-ProteinID:
AMV34034
LinkDB
All DBs
Position
complement(4491553..4495893)
Genome browser
AA seq
1446 aa
AA seq
DB search
MANAEATYDRVNDYTSVKISLARPQDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVAHIWFFKAMPSR
LGNLLEMKTTSLEKVIYFQDYVVTNPGTTELELQQLLTEEEYRAARAQHGDSFEADMGAE
AVRKLLQALDLVKLSEDLRTELSETSSKQRKKDLINRLKLVESIRDSENRPEWMVLDVIP
VIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQSV
DALFDNGRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRLRL
HQCGLPKKIALELYQPFIIRKLKELGHADTIKSAKKMLERKDEEVWDILEQVIRNHPVLL
NRAPTLHRMGIQAFEPTLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAHTL
MMSTHNIFAPSNGKPIMSPSQDTVMGCNYISVMLPDQKGEGMVFATMTEAEYAFQQGTIA
RHAKVKVRLPANRKLKTDDPNAKPGAIIETTFGRILFNSILPEGMDYYNISLKGSDLAAV
ISDCYQKLGRRATIKLLDDMNQLGFRESTRSGLSFGADDLLTPESKTKHIADADKKVMAF
QKNYLKGVMTAQERYNQVLDAWTATRELITKDMLQAMENDNHRGGWYINPVFLMASSGAR
GGIEQIRQLCGMRGLMAKPTGEIIETPIKSNFREGLGVLEYFSSTHGARKGLADTALKTA
DSGYLTRKLADVAQNVVITLHDCGTTQGITKGTIYRGEKVEVRLADSIIGRVSRQNIVNL
VTSEVIVEENEMITRDIARKIEEMGLEKIQVRSPMTCDAPLGVCRLCYGMDMSTGSLVEE
GMAVGIIAAQSIGEPGTQLTMRTFHQGGAANTSMEESDIKAKKTGIVKFMKMRYVTNDEG
HDVVLTRNCEIAIVDPRGRELERYDVPSGARLLVKEDSNVEKGQPLCEWNPHKIPIFSTA
GGKIAFVDIIEGETLKLEKDPSGNFQRRIMDSRGKYHPQLMIEDSEGKALDVHYLPEKAV
ITCTEGSFVNPGTEIAEMPREATGVKDITGGLPRVTEIFEARKPKDPAVVAELDGTVEIS
KDRKRGKRSIVVRSESGEEVEHLVPPGKRFLVHSGDIVRAGQALVEGPMVPHDILRVSGE
EAVQQYLVHEVQQVYRLQRVEINDKHIEIIITRMLRKMKITNAGDTSLLSGLVMDRFEFK
RVNDQLAKCVKITDPGDTEFALGAIVPRDAFEASNAQCEGLGGKPAKGKKPKPANGEVQL
LGITKAAVQSNSFISAASFQETTKVLTEAALAGKVDRLVGLKENVILGHLIPAGTGFRVF
QDSEVSYRKEALEDLVNRGTAAAEESFPLLNQAPRPAESFAPPAEEASDGPGLDASAIDS
GSTSEE
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgctgaagccacctacgatcgagttaatgactacacttcggtcaagatttcg
ttagcgcgaccccaagacattcggtcttggtcgttcggcgaagtcaagaagccagaaacc
atcaactaccgaacctaccgaccggagaaggatggtcttttctgcgaacgaatcttcgga
ccagaaaaggattgggagtgcgcgtgcggtaagtatcgcggcatgaagtacaaggggatg
atctgcgatcgctgcggtgtgaaagtgactcactcccgcgtccgtcgaaagcggatggga
cacatcgagttggcagccccggttgcgcacatttggttcttcaaagcgatgcccagccga
ttgggtaatttgctggagatgaaaaccaccagtttggagaaggtgatttatttccaggac
tacgtggtgaccaaccccggcacaaccgaactggaactgcagcaactgctcaccgaggaa
gaataccgggcagcccgcgcacaacacggcgactccttcgaagccgacatgggagcggaa
gccgttcgcaagcttcttcaagcgttggacttggtcaagctgtccgaagacctccgcacg
gaactctcggagacgagcagcaagcagcgcaagaaggatttgatcaaccgattgaagttg
gtggaatcgattcgcgatagtgagaaccgccctgagtggatggttctggatgtgatccca
gtcattccgcccgatttgcgaccattggtgcttctcgatagcggcaacttcgctacgtcc
gacttgaacgacctctatcgccggatcatcaaccggaacaaccggctgcggaagctggtc
gatttgaacgctccagaagtcatcattcgcaacgaaaagcgtatgttgcagcaatcggtc
gatgcgctttttgacaatggacgatgcaagcgacctgtcttgggtagcagcaaccgcccg
ctcaagagcttgaccgacatgatcaagggtaagcaaggccgcttccgcgagaacttgctc
ggcaaacgcgtggattattcggctcgctcggttatcgtggtgggaccgcggcttcgattg
caccaatgcggcctgcctaagaagattgcattggagctttaccagccattcatcattcgc
aagctgaaggagttgggacacgccgacaccatcaaatcagccaagaagatgttggaacgc
aaggatgaagaagtttgggatattctcgagcaagtcatccgaaaccaccccgtgttgctc
aaccgtgcacctacgttgcaccggatggggattcaagcgtttgaaccaactctcgtagaa
ggaaacgcgatccatttgcacccgttggtttgcaaaggcttcaacgcggacttcgacggc
gaccagatggctgttcacttgcccctctcgattgaggcgcaggtcgaagcgcacacgctc
atgatgagcacgcacaacatcttcgctccgagcaacggtaagccgattatgagtccttcc
caggacacggttatgggttgtaactacatctccgtgatgctccccgatcaaaagggcgag
ggtatggtcttcgccacaatgaccgaggcggagtatgcgttccagcaaggaacgattgct
cgacacgcgaaggttaaagttcgacttcctgcaaaccggaagttgaagaccgacgatcca
aatgccaagccgggcgcgatcatcgaaactaccttcggacggatcttgttcaactcgatc
cttcccgaaggaatggattattacaacatctccctcaagggtagtgacttggctgcggtt
atcagtgactgctaccaaaagctaggtcgacgcgcgacgatcaagctgctcgatgatatg
aatcaacttggtttccgcgagtccactcgatccggtctctccttcggtgcagacgatttg
ttaacaccggaatcgaagaccaagcacatcgccgacgctgacaagaaggtgatggccttc
caaaagaactaccttaagggggtgatgacagctcaagagcgttacaaccaagtcttggat
gcttggacggcaactcgcgagttgatcacgaaggacatgttgcaggcgatggagaacgac
aaccatcgcggaggttggtatatcaatccggtcttcttgatggcgtcctcgggtgcacgg
ggtggtatcgagcagattcgtcagctgtgcggtatgcgaggtctgatggcaaagccgacc
ggcgaaatcatcgagacgccgatcaaatcgaacttccgagaagggttaggtgtactggag
tacttcagctcgacgcacggtgctcgaaaaggtttggccgatacggctcttaagacggcg
gactcgggttacctgactcgtaaactagccgacgtcgcgcaaaacgtcgttatcactttg
cacgactgcggtaccacccaaggaattaccaagggaacgatttaccgcggcgagaaggtg
gaagttcgtttggcggattcgatcatcgggcgggtcagccgccagaatatcgtcaacttg
gtcacttccgaagtgatcgttgaagaaaacgagatgatcacgcgagacatcgcacgcaag
atcgaagaaatgggcttggaaaagatccaagttcgatcgccgatgacttgcgatgcgccg
ctcggtgtctgccgactttgctatgggatggacatgagcactggttcgctcgtcgaggaa
ggaatggcggtcggtattatcgctgcacagagtatcggtgagcccggtacgcagttgacg
atgcgtacgttccaccaaggtggtgcggcgaacacgagcatggaagaaagcgatatcaag
gcgaagaagaccggtatcgtcaagttcatgaagatgcggtacgtgacgaacgacgaaggg
cacgatgtggtcctgactcgaaattgcgagatcgcgatcgtcgacccccgtggacgtgaa
ttggaacgctatgacgttccctcgggtgctcgattgttggtgaaggaagattcgaacgtc
gaaaagggacaacctctttgcgaatggaacccgcacaagattcctatcttctccaccgcc
ggcggtaagatcgccttcgtcgatatcattgaaggggaaaccctcaagctggagaaggat
ccgagcggtaacttccaacgccgcattatggattcgcggggcaagtaccatccgcagctc
atgatcgaggactcagaaggcaaagctctcgacgtgcactacctgcccgaaaaggcagtt
atcacttgcaccgaaggctcctttgtcaatccaggtaccgaaatcgcggaaatgccgcgg
gaagcgaccggggttaaggacatcacgggtggtctccctcgcgtaacggaaatcttcgag
gctcgcaaacccaaggatccggcggttgttgccgaattggatgggacagtcgagatttcg
aaggatcggaaacgcggaaagcgttcgatcgttgtccgaagcgaaagcggagaagaagtc
gaacacttggtaccaccgggcaagcgattcctggttcactccggggacatcgttcgagct
ggacaagctcttgtagaaggaccgatggttccgcacgatatccttcgcgtgagcggggaa
gaagcggtccaacaatacttggtccacgaagtgcaacaggtgtatcgtctgcaacgtgtg
gaaatcaacgacaagcatatcgagatcatcatcactcgaatgcttcggaagatgaagatc
acgaacgcaggggataccagcctcctgtccggattggtcatggaccggttcgaattcaag
cgggtcaatgatcaactggcgaagtgcgtcaagattaccgatccgggcgataccgagttt
gcactcggcgcgatcgtgcctcgcgatgctttcgaagcgtccaatgcgcagtgcgaagga
ttgggtggcaaacccgctaagggcaagaagcctaagcccgcgaacggcgaagtccagttg
ctcggtatcaccaaggctgcggtgcaaagcaatagcttcatctcggcagccagcttccag
gaaacgaccaaggttctcaccgaggcggcactggcaggcaaggtggatcgattggtcggt
ctgaaggagaatgtgattctcggtcacttgattcctgctgggacgggcttccgcgtcttc
caagactccgaagttagctaccgcaaggaagctctcgaagacttggtcaaccgcggtact
gctgcggcagaagaatcgttcccgctcctcaatcaagcaccgcgacccgcggaatccttt
gctccaccagcagaggaagcgagcgacggtcctggtctggacgcatcggcaatcgattcc
ggtagcaccagcgaagagtag
DBGET
integrated database retrieval system
