Pirellula sp. SH-Sr6A: VN12_19950
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Entry
VN12_19950 CDS
T04360
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN12_19950 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pir03019
]
VN12_19950 (cshA)
03009 Ribosome biogenesis [BR:
pir03009
]
VN12_19950 (cshA)
Enzymes [BR:
pir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VN12_19950 (cshA)
Messenger RNA biogenesis [BR:
pir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VN12_19950 (cshA)
Ribosome biogenesis [BR:
pir03009
]
Prokaryotic type
rRNA helicases
VN12_19950 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMV34408
UniProt:
A0A142Y5B2
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All DBs
Position
complement(4931028..4932350)
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AA seq
440 aa
AA seq
DB search
MESKIAETFEELGLSPIMMRALAKLGYERPSPIQSRVIPWALEGYDLIGQARTGTGKTAS
FAIPILEQLDPLRVCPSPQALVLVPTRELAAQVHGEFVKLADGCPTEILEVAGGKHLDRQ
TRKLREGVQVVVGTPGRVIDHIQRGSLDLRRLWCVVLDEADRMLDIGFRPDIERILRRCP
ENRQTLLLSATLAAEVKELANRYLFEPVHIDCSNKDISVETIEQRYLTVAPEKKLETLLA
LLERERPPQTIIFCRTKLGTAKLHNQLERQLHRYPDLKHLRLATIHGNMNQSQRDAVFKQ
LREGSIQILVATDVVGRGIDVSTISHIINWDLPDDCSDYVHRVGRTGRMGREGIAFSFVA
KGQGQMLTEIEHKINRLLVLDPLSENHATMSREVITPTVIRDEVEIGSAPESFGLVAHGA
TKKPRLNRMRRSLSDRERRR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaaaaatcgctgagacgtttgaagagctcggactatctccgatcatgatgagg
gcccttgccaaactcggatacgaacgcccgtcacccatccaatcgcgtgtcattccttgg
gccttggaggggtacgatctcatcggccaggcgcgaacaggaaccggtaaaacagcttcc
ttcgcgatcccgatcttggagcagctcgacccactgcgagtctgcccttccccccaagcc
ttggttttggtccccactcgagaattggctgcccaagtccatggggaatttgtcaagctg
gccgatggctgcccgacagagatcctcgaggtcgccggtggcaagcatttggaccgccaa
acccgcaagcttcgagaaggggtgcaagtcgtcgtcggaacaccggggcgtgtgattgac
cacatccagcgaggatcgctcgatttgcggcgcctttggtgtgtggtgctcgacgaagcg
gatcgcatgctcgatatcggcttccgacccgacattgaacggatccttcgcaggtgtccc
gaaaaccgtcagacccttctcctcagcgcgacgttggccgcagaggtgaaagagctggcc
aaccgctatctctttgagccggtccatatcgactgctcaaataaggacatctccgtcgag
acgatcgagcaacgttatcttacggttgcaccggagaagaagctggagacgctgctggct
ctactcgaacgagagcgtccaccccaaaccatcatcttctgtcgaaccaaactcgggact
gcgaaactgcataaccagcttgaacgccagttgcaccgatacccagacttgaaacatctc
cgcctggcgaccattcacgggaatatgaatcaatcgcaacgcgacgcggtattcaagcag
ttgcgggagggctcgatccagatcttggtcgcgaccgatgtcgtcggacgaggaatcgat
gtttcgacaatctcccatatcatcaactgggatctgccggatgactgcagcgactacgtc
caccgagtcggccgtaccggacggatggggcgagagggaattgcattctcgttcgtggcc
aaaggacaaggtcagatgctgacggagatcgagcataagatcaatcgactgctggtgctc
gaccctctatcggaaaaccatgcaaccatgtcccgcgaggtgatcactccgaccgtcatt
cgggacgaagtagaaattggatctgcaccggaaagttttggtctggtcgcccatggagct
acgaagaaacctcgactcaaccggatgcgacgctccctcagcgaccgcgaacgccgccgc
tag
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