Pirellula sp. SH-Sr6A: VN12_20220
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Entry
VN12_20220 CDS
T04360
Symbol
rsmC
Name
(GenBank) Ribosomal RNA small subunit methyltransferase C
KO
K00564
16S rRNA (guanine1207-N2)-methyltransferase [EC:
2.1.1.172
]
Organism
pir
Pirellula sp. SH-Sr6A
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pir03009
]
VN12_20220 (rsmC)
Enzymes [BR:
pir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.172 16S rRNA (guanine1207-N2)-methyltransferase
VN12_20220 (rsmC)
Ribosome biogenesis [BR:
pir03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
VN12_20220 (rsmC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTS
Methyltransf_25
Methyltransf_31
Methyltransf_4
Methyltransf_11
Methyltransf_12
Methyltransf_23
TehB
PrmA
TRM5-TYW2_MTfase
Ubie_methyltran
Methyltransf_18
GidB
Methyltransf_2
Cons_hypoth95
MetW
UPF0020
Methyltransf_15
VRP3
FtsJ
CMAS
NpmA
Methyltransf_16
Motif
Other DBs
NCBI-ProteinID:
AMV34462
UniProt:
A0A142Y617
LinkDB
All DBs
Position
complement(4995856..4997022)
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AA seq
388 aa
AA seq
DB search
MSETPTSSDGYEPVARRLPPRAEEAILAGTLLDWDWLGLRKKLGIPDLEGLKLVSISSGR
HQAAEGLARHTAGEQLRLQVQCFHIDSFQASRTEGHLQLAEDNSPVPSPGNVEVLCDADL
PDSRFHAGLLSLVTTGEGELSRDYIQQLFHHLVLGGVLFVSVDNPDDRWVLDQLKTFERS
VKVRKHEQGTVYWIEKTAELKKRKDFACELAYRDCDELIKMVTRPGVFSHRHLDNGARQL
LDAVDVYPESKLIDIGCGAGSVALGLAKRDPSARVHAVDANARAIDCVQRGIRLNGLTNL
TTEVNWTGVYGEPGSYDMALANPPYFGDFHIAEKFLAAAHRSLRPGGRLVLVTKHPNWYE
ANLGRWFEEGELFPSRRYHIASGVKPKA
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaacccctacttcctccgacggctacgaaccggttgcccgccgtttgcctcct
cgagccgaagaagccatcttggctggcacgctcctcgactgggactggctgggtcttcgt
aagaaacttgggattcccgatctcgaaggattgaagttggtcagtatctcctccgggcgg
caccaggccgccgaagggctggctcgtcacacggcgggggaacagctccggcttcaggtc
caatgcttccacatcgattccttccaggccagtcggaccgaagggcatcttcagctggcg
gaagataattccccggtcccatcacctgggaatgtcgaggtgttgtgcgatgccgatctt
cccgactcccgcttccacgccggcctcctttcgctggtgacgacaggcgaaggagagctt
tccagggattacattcagcagcttttccatcacctggtgctcggaggggtgctcttcgtg
tcggtcgataatccggacgatcgctgggttctcgatcagctcaagaccttcgagcgcagc
gtgaaggttcgcaagcacgagcagggaacggtctactggattgagaaaacagcagaactc
aagaagcgcaaggattttgcttgcgagctcgcctatcgggactgcgatgagctgatcaag
atggtgacgcgtcccggagttttctcccatcgccacctcgacaatggagctaggcagctg
ctggatgcggtcgacgtctacccagagtccaagctgatcgatatcggctgtggtgccggt
tcggtggctctcggcctagcgaaaagggatccgagcgcccgcgtccacgcggtcgacgcc
aacgcccgtgcgatcgattgcgtgcagcggggaattcgcctcaatgggctgaccaatctg
acgaccgaagtgaattggacaggcgtttacggggagcccggctcctacgacatggcactc
gccaacccgccctacttcggcgactttcatattgccgagaagtttcttgcggccgctcac
cgttcgctgaggcctggcgggaggttggtgttggtgaccaagcatcccaactggtacgag
gctaatttgggaaggtggtttgaagagggtgaattgtttccgtcccggcgataccacatc
gcatcgggggtgaagccgaaggcctag
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