Pirellula sp. SH-Sr6A: VN12_21025
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Entry
VN12_21025 CDS
T04360
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03030
DNA replication
pir03430
Mismatch repair
pir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VN12_21025 (dnaE)
03430 Mismatch repair
VN12_21025 (dnaE)
03440 Homologous recombination
VN12_21025 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pir03032
]
VN12_21025 (dnaE)
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_21025 (dnaE)
Enzymes [BR:
pir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VN12_21025 (dnaE)
DNA replication proteins [BR:
pir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VN12_21025 (dnaE)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VN12_21025 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
PHP_C
Motif
Other DBs
NCBI-ProteinID:
AMV34621
UniProt:
A0A142Y5Z3
LinkDB
All DBs
Position
complement(5145934..5149515)
Genome browser
AA seq
1193 aa
AA seq
DB search
MESNTPAQRPFVHLHCHSHYSLLDGASPIGKLLKRAKSHGMTALALTDHGNLHGSLEFYK
KARDLGINPILGYEAYVAPGSRFERDASSSKEAAYHLTLLAKNQTGFKNLIRLASAASLE
GFYFKPRIDKEILAKYSEGIICLSGCVSSEFSRAILRGQDTDAAIRDATHVTEWFSKVFQ
DRFFIEIMNNNLEIQRQQMAGAIDVANRVGIPLVATSDAHYVDKEDAEVQDVLLCIATGK
FRTDTNRMQMEGDQFYLRSPEEMYQHFPGHADAVARSQEIANSVDIDLELGKRNFPTYRL
PNPEITADDYLRELCTNGLKARYAKSPDMLVDGELATVVQERLDRELGVIRKLGFSNYFL
IVWDFVRYAREIDVPATARGSGVGALVCYALYLSHVCPVRYDLLFERFLDESRLEAPDID
IDFCQERRGEIIRYVKEKYGESNVAQIGTFGTLKARGAIKDVGRTLGLPLNRVAQVSELV
PDDPKISIQNAMEESEDLKKLYESDSDVRELLDYAMKIEGMARNIGTHAAAVVIADKPLT
EYVPLMRVSGKEDIITQWSMGDVEAAGLLKMDFLGLRNLTILSKSVDIIEQTRGVRIDPL
DFPLDDKETFELLKRGETKGVFQLESGGIRDLLQRMKPDRFHDIIATNALYRPGPLEGGM
VDEYVAVKLKKKQATYIHPVLQEILEETNGVMVYQEQVMRILNRLGGIELAKAYTCIKAI
SKKKEELIAANAEKFLAGCLEKGLTRKEAEDFWNMILKFAGYGFNKSHSTAYALVAYQTA
YLKTHYKVEFMAALLTGDIPNRNFKRKDGLVEHIEDCQRMGIAVEAPSVNTCSADFSVAD
GKIHFGLSAIKGCGSSAADAIATERKKNGPFKNIFEFCERVDAAACGKSTIESLIKAGAM
DCFGAKRAQVMAVIEKALQGGAAKLKDKKSGQMSLFDDVSAVAEEVKVVLPDVPEFPERE
KLAMEKEVLGYYLTAHPLSEYATTLQAFCSHTSSTIKNAKHRDEVLMGGMISSIKMAFIK
NPKPGQSAKYANFDLEDMDGYVRGICWPSDFEQFGELIQHDAVVLARGTVDKRGEGDEVN
FIVNELIPIAEADTKFTTGIHILFDQSRHDPELMTKIREILRGYPGQRDVMFALRLHSGE
TVHIKATKHRVAIDSELRTRLDDLLGPPSHKLLATKPKMKSGGSQNQFRRSAT
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaatccaacacccctgcccagcgtccgtttgttcacttgcactgccacagtcattac
agtttgctcgatggtgcaagcccgatcggcaaactgctcaagagggccaaatcgcacggc
atgaccgcgttggcgctcaccgatcacggtaacctgcacggctctctcgagttctacaag
aaggctcgggatttgggcatcaatcctattctggggtatgaagcctacgtcgcgccgggc
agtcgtttcgaacgggacgcttcctcgtcgaaagaagcggcgtaccatttgacgctgctg
gctaagaatcaaaccggctttaagaacttgatccgcctcgcttcggcagcaagtctggaa
ggtttctatttcaagccgcgaatcgacaaagagatcctggcgaagtacagcgaagggatt
atctgcctcagcggttgtgtctcgagcgagttttcgcgcgcgatccttcggggacaagac
accgatgcggcgattcgagacgcgacccatgtcaccgaatggttttcgaaggtctttcaa
gatcgatttttcatcgagattatgaacaacaatctcgagatccagcggcagcaaatggcc
ggggcaatcgatgtggcgaatcgagtcggtattcccttggtcgccaccagcgatgcccat
tatgtcgacaaagaagacgcagaagtgcaagacgtcttgctttgcattgcaacgggaaaa
ttccgcaccgataccaatcgcatgcagatggaaggggatcagttctacctccgttcgccg
gaggaaatgtaccagcacttcccaggtcatgccgatgccgtcgctcgatcgcaggagatc
gccaattcggtcgatatcgatttggaattgggtaaacggaacttcccgacctatcggttg
cccaatcccgaaatcactgccgacgattacttgcgagagctgtgtaccaatggtctcaag
gcccggtatgcgaagagtcctgacatgctcgtcgatggcgaattggcaacggtggttcaa
gagagattggatcgcgagttgggtgtgattcgcaagctgggattctcgaattactttttg
atcgtatgggatttcgtccgttacgcacgtgagatcgacgtacccgcgaccgctcggggg
tctggagtcggtgcactggtgtgttatgcgctgtacttgtcccacgtttgtcccgtccgg
tatgacttgctgttcgaacggttcttggacgagagccgattggaggcgcccgatatcgat
atcgatttttgccaggagcgacggggcgaaatcattcggtatgtaaaggaaaagtacggc
gagtcgaacgtagctcagattggaacgttcggtacgttgaaggcgcgaggggcgatcaaa
gacgtggggcgaacgctcggattgccgttgaatcgggttgctcaagtcagcgagttggtt
ccggacgatcctaagatctcgattcaaaacgcgatggaggaaagcgaagacctcaagaag
ctttacgagagcgattccgatgtccgcgaattgctcgattatgcgatgaagatcgaaggg
atggcacgcaacatcggtacgcatgccgcggccgtcgtgattgcggacaaaccccttacc
gaatacgtcccattgatgcgcgtatcgggcaaagaggacattatcacccagtggtcgatg
ggggacgtggaagcggccggattgctcaagatggactttttgggcctccgcaacttgacc
atcctttccaaatcggtcgacatcatcgagcagactcgaggagttcgaatcgacccactc
gatttcccgctggatgacaaagagacctttgagttgctcaaacgcggggagacgaaaggg
gtatttcagttggagtctggagggattcgcgacttgctccagcgtatgaagcccgaccga
ttccacgatatcatcgcgaccaatgcgctctatcggcccggtcctctcgaagggggaatg
gtcgatgaatatgtcgccgtgaaactgaagaagaagcaggctacttatatccatcccgtt
ctccaagagatcttggaagagaccaacggcgtgatggtttatcaagagcaggtcatgcgg
attctgaaccgattgggaggaatcgagctcgccaaagcctacacgtgtatcaaggcgatc
agcaaaaagaaggaagaattgatcgctgccaacgccgagaagtttctggcgggatgcctg
gagaaaggtctaacccggaaggaagccgaagacttctggaacatgattcttaagttcgcg
gggtacggcttcaacaagagtcattcgacagcttacgcgctcgtcgcataccaaacagcc
tacttaaagacccactacaaagtggagttcatggccgccttgttgacgggtgatattccc
aaccggaacttcaaacgaaaagatggtctggtcgagcatatcgaagattgccaacggatg
ggaatcgctgtggaggcccccagtgtcaatacatgctctgccgacttcagcgtcgccgat
ggcaagattcactttggcctttcggcgatcaaaggttgcggtagttccgctgccgatgca
attgccaccgaaaggaaaaagaacgggcctttcaaaaacatctttgagttttgcgaacgt
gtcgacgcagcagcttgcggcaaatccacgatcgaatcattgatcaaagccggtgccatg
gattgtttcggtgcaaagcgggcgcaggtaatggctgtgatcgagaaagctctgcaggga
ggagccgcgaagctgaaggacaagaagagcggacagatgagtctcttcgacgatgtttcg
gcggtcgccgaagaggtcaaggtggtattgccagatgttccggagtttccggaacgtgag
aaactggcgatggaaaaagaagtgctcgggtattacttgaccgcccatcccctttccgaa
tatgcgacaaccctgcaagcattttgttcgcatacttcctcgacgatcaagaatgcgaag
catcgtgacgaagtgttgatgggagggatgatttcctctatcaagatggcgtttatcaag
aatccgaaaccggggcagtcagccaagtacgccaatttcgacttggaagatatggatggt
tacgttcgtggaatatgctggccaagcgactttgagcagttcggcgaattgatccagcac
gatgcggttgttttggcgcggggaaccgtcgacaagcgaggggaaggggacgaagtaaat
ttcatcgtcaatgaacttattccgatcgctgaagcggacaccaagttcacaaccgggata
cacattctgttcgatcaatcacgacacgaccctgaattgatgacgaagattcgcgagatc
ctgcgcgggtatccaggccaacgcgatgtgatgttcgcgttgcgattgcactctggtgaa
acagtacacatcaaagcgacgaaacatcgggttgccatcgattccgaattgcgaacacga
ttggacgatttgttgggacccccgagccataaactgctagcgaccaagccgaagatgaag
agcggtggtagccaaaaccagttccgtcgatctgcgacgtga
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integrated database retrieval system
