Pirellula sp. SH-Sr6A: VN12_22090
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Entry
VN12_22090 CDS
T04360
Symbol
dmsB
Name
(GenBank) Anaerobic dimethyl sulfoxide reductase chain B
KO
K00124
formate dehydrogenase iron-sulfur subunit
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir00630
Glyoxylate and dicarboxylate metabolism
pir00680
Methane metabolism
pir01100
Metabolic pathways
pir01120
Microbial metabolism in diverse environments
pir01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VN12_22090 (dmsB)
09102 Energy metabolism
00680 Methane metabolism
VN12_22090 (dmsB)
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Motif
Pfam:
Fer4_11
Fer4_9
Fer4_7
Fer4_10
Fer4_2
DmsC
Fer4_21
Fer4
Fer4_4
Fer4_6
Fer4_16
PabTrmU54_TRAM_dom
Motif
Other DBs
NCBI-ProteinID:
AMV34833
UniProt:
A0A142Y6I5
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Position
5407744..5409351
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AA seq
535 aa
AA seq
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MSVIEDRIRTQFAPRYLRLEDLLNDQRTMSAVDSFSYWHEQADLHQEVYRAFVPMTVPEA
GEQYAFEVDLDACSGCKACVVACHNLNDLDEGETWRKVGTITSTKADLPVVQHVTTACHH
CVDPGCLKGCPVKAYEKDERTGIVKHLDDQCFGCKYCTMMCPYEVPQYSKRLGIVRKCDM
CSQRLSMGAAPACVQACPNAAIRISVVTREQCRPASREEALVATAPASLPTQPTTQFKTA
RRSALLQSNTSNWGLQSLESATESVQDGHWPLVAMLTLSQASVGVWSCLCISSPSGPVTI
ALAWLATFLGVVGVHAALFHLGRPLYAYRVFLGWRTSWLSREAIGLGAFMASSVTTSVVM
TLSALGFQGVGLLVTPGTYATGILGWIGAYCSAMIYIATGRRVWSWSRTIWDMAWTILGL
GCLGYGSIAVLPYGWMWGAWAFSMLATIPKCIDLWRGDHVHDTSGQDVSARSGRLMRQEL
MPQVGWLLNLSFITLIAIFMERNEIALLGAIAFHAVHRWIYFASCVFQRMPGAAT
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcatcgaagatcgaatccgaacccaattcgctccgcgatatcttcgtctcgag
gatttgctgaatgatcaacgcaccatgagtgcggtggattcgttttcttactggcatgag
caagcggacttgcatcaagaggtctaccgggcgttcgtcccgatgacggtaccagaagct
ggagagcaatacgcgttcgaagtggatttagacgcctgcagcggctgcaaagcctgcgtc
gttgcctgccataacttgaatgacctcgacgagggcgagacgtggcgcaaagtgggtacg
atcacgagcacaaaggccgatctgcccgtggtgcaacatgtaacaaccgcttgccatcac
tgcgtcgatcccggatgtctcaagggctgtcctgtcaaagcgtatgaaaaagacgaaaga
accggaatcgtcaaacatctcgacgatcagtgtttcggatgcaagtactgcacgatgatg
tgcccgtacgaagtaccgcaatacagcaagagactcggaattgtacgcaaatgcgatatg
tgctctcaaaggctatcgatgggtgcagcacccgcatgcgttcaagcgtgcccgaacgcg
gccattcgaatctcggtcgtgacccgcgagcaatgtcgaccggcctcccgtgaggaagct
ctcgttgctaccgcgcccgccagtctccctacgcagccaacaacccaatttaagaccgct
cgccgatcggctctgctccaatcgaacacttcgaactggggacttcagtcgctcgaatcc
gctacggaatcagtgcaggatggccactggcctttggtcgccatgttgacgttgtcccaa
gccagtgttggagtttggtcttgtttgtgcattagctctccttcaggcccagtcaccatc
gcgctcgcttggttggcgacctttctaggagtagtcggtgttcacgcggccctatttcat
ttgggacgtccgctttatgcctatcgagtgtttttgggttggcgaaccagctggctgagc
cgtgaggcgattggtctgggcgcattcatggcctcgtccgttaccacgtcggttgttatg
acactatcggctttggggttccaaggagtaggcctcctggtgactcctggaacgtacgcg
accgggatactggggtggattggggcttactgttccgccatgatctatatcgcgaccgga
aggcgggtgtggagctggtcgcgaacgatttgggacatggcttggaccatcctcggattg
ggatgcctgggctacggatcgatcgctgtgttgccctacggttggatgtggggggcctgg
gcgttttcgatgcttgccaccatccccaaatgcatcgatttatggcgaggcgaccatgtt
catgacacttctggacaggatgtgtcagcgcgtagcgggagattgatgagacaggaattg
atgccacaggttgggtggctcctcaatttgagtttcatcacgctgatagccatcttcatg
gaaagaaatgagattgcacttctaggagcgatcgcctttcatgccgttcatcgatggatt
tattttgcatcgtgtgtatttcaacgaatgccgggggctgcaacatga
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